Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4278g00012 ATGGGAGAAGGGGAAGGTGAGGGGAGTGATTGTGCTCCCAAGAATGTTGTGCCCAACGACGTCGTCGCGAATGCGCTTTTGCCGTCTGATGTTCCCGCCAAGAAGCTCGCCAGACAGCTCGATTTCACCGGCTTCGGTGGGATGCCACCGCAGTCGCCGGTGGTTTTGCCTCTGCCGCCTTCTGCTTCCGTCAGGGTTGGGAAACCAGAATCTCCAAAGTCGAGACCGAGGCCTGGCTTTGAAATTAAAGAAGCTACTCCCAAAAAGCAAAAACAGTGCAATTGTAAACATTCAAAATGCTTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGCTATAACAATGTGGAAAATGAAGCTGCTAGACGAGAAGCGGTGGAAGCTACTTTGGAACGCAATCCAAATGCGTTCAGGCCGAAAATTGCAAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAATTTTGATTTTGGGAAAGCACAACAAGGGATGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGTAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCAGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCATCACCACCAATATCAAAAAAAAGAAAAGGCCAAGAACTCTTATTTGGGTCAACCATCAAAGATCCGTCACTTGGAAGGCTGGGACAACAGGCAAACAATGTCAGAGTTCCTGCACCATCCTCATCCATGTCACCTATTCCAGGTGCTCGTGTTGGACCGGCAACATTAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCTAAGACATTTACTGACCAGAAAAATTTAATGGACAAGCATGCGGAAGATCACACAGAAACTTCTCTTGCTTCTTCAACTCATGAGCAATTACCAAACCAAAAGGAAGCTAATGTTGAGAAAGCTATGGCTGATGATGATTGTTTGAGTGCAAACCAGACAGATAAAATCAGCCCAGATAATTCTTGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGAACCTTAGCATTGATGTGCGATGAGCAAGACACAATGTTCATGACTTCTGCCTCCCCTATTGGATCAAGGGCTCATGCTTGCAACACATCTTCGCAACCGCCATATGGTCAAGGAATGACAGAGGTCTATGCCGAGCAAGAAAAAATTGTACTGACAAAATTTAGAGACTTTCTCAATAGGGTTATCACTATGGGAGAAATAAATGAAACGAAGTGTTCTTCATTAGCTAGAAGTGAATTAGAGAGTGAAAAGGACCCAAACAACAATTGCACTGGAAATACCAGTACTGAGACAGCCCATCAGCAGGGAACCACTAATAATGTTGTTGCCAAAGCTGCGGGCAACATTACTTCTACATCTTCGTTTCCTGGTGGTAGTCTTATTCCTGAAAAATAG 1650 0.4448 MGEGEGEGSDCAPKNVVPNDVVANALLPSDVPAKKLARQLDFTGFGGMPPQSPVVLPLPPSASVRVGKPESPKSRPRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGSTIKDPSLGRLGQQANNVRVPAPSSSMSPIPGARVGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTDQKNLMDKHAEDHTETSLASSTHEQLPNQKEANVEKAMADDDCLSANQTDKISPDNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMTSASPIGSRAHACNTSSQPPYGQGMTEVYAEQEKIVLTKFRDFLNRVITMGEINETKCSSLARSELESEKDPNNNCTGNTSTETAHQQGTTNNVVAKAAGNITSTSSFPGGSLIPEK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4278g00012 549 MobiDBLite consensus disorder prediction 503 525 - -
Vium4278g00012 549 ProSiteProfiles CRC domain profile. 89 213 IPR005172 -
Vium4278g00012 549 Coils Coil 123 143 - -
Vium4278g00012 549 MobiDBLite consensus disorder prediction 49 81 - -
Vium4278g00012 549 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 90 125 IPR005172 -
Vium4278g00012 549 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 176 210 IPR005172 -
Vium4278g00012 549 SMART CXC_2 173 214 IPR033467 -
Vium4278g00012 549 SMART CXC_2 88 128 IPR033467 -
Vium4278g00012 549 PANTHER TESMIN/TSO1-RELATED 51 485 IPR028307 -
Vium4278g00012 549 MobiDBLite consensus disorder prediction 353 414 - -
Vium4278g00012 549 MobiDBLite consensus disorder prediction 496 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4278g00012 Vium-Chr4278 106901 114574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4278g00012 9 499 CPP Transcription Factor Family AT4G29000 59.476 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vium4278g00012 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4278g00012 - - gmx:100786353 970.304