Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4278g00011 TTTTTTCAGGCAAGAATTCTTACGGAGCCTGGATTTGATGATTCTAATAAGCATGAAGAGTATTCTAGAGACATTGATAATGAGGATACTTGTACTAATACTCACGATGGAAATGCAACATGCACCACAAGTGACATAAACAGGGAAGATGAAGAGAACGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTTGCGGAGCTTTTAACTTTGCAGCCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTCAGTAGAATCATTAGTGTTTTGGGTAACCTTGATGAGAGTGTTTGGGTTGGTTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTATTGAAGCCTGTTTACCAAATAGGTCCCCTGATGAAGTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCAATGGAGTTGCTTAATGACAAGTACTTTAATGAAGAGCCTCTTCCTGTGCCTATTTCTGAGCTGCCAGTTCCTCTTAACAGAAACGGACAAGATGAGGATTCCCCTGGTGGGTGGGGTGATCTGGATGGAATGGAATCTGATTCTGATTTTGATGAGTTTGGCCCGCTCAATATTACTAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 747 0.4284 FFQARILTEPGFDDSNKHEEYSRDIDNEDTCTNTHDGNATCTTSDINREDEENELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFPGTADIDQLSRIISVLGNLDESVWVGCSKLPDYGIISFSKVENPAGIEACLPNRSPDEVALVKRLVCYDPAKRATAMELLNDKYFNEEPLPVPISELPVPLNRNGQDEDSPGGWGDLDGMESDSDFDEFGPLNITRTGTGFSIQFP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4278g00011 248 Gene3D Transferase(Phosphotransferase) domain 1 22 193 - -
Vium4278g00011 248 MobiDBLite consensus disorder prediction 202 234 - -
Vium4278g00011 248 SMART serkin_6 12 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4278g00011 248 SUPERFAMILY Protein kinase-like (PK-like) 54 193 IPR011009 -
Vium4278g00011 248 PANTHER CELL DIVISION PROTEIN KINASE 43 193 - -
Vium4278g00011 248 Pfam Protein kinase domain 54 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4278g00011 248 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4278g00011 Vium-Chr4278 102984 103996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4278g00011 26 248 Core Cell Cycle Gene Families AT4G28980 60.251 3.61e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vium4278g00011 Pkinase 1.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4278g00011 - - vum:124837373 521.161