Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4278g00010 ATGGAGATGGATCCCCCACCCAAGAGCTGGAGCATCCATACCCGATCCGAGATCATCGCCAAGTACGAGGTCATGGAGCGGGTCGGGTCGGGGGCTTACGCCGACGTCTACCGTGGCCGTCGCCTCTCCGATGGCCTCACCGTCGCCCTCAAGGAAATCCACGACTACCAATCTGCTTTCCGAGAAATCGACGCGTTGCAACTCCTCCAGGGATTCCCAAACATCGTCGTTATGCACGAATAATTCTGGCGCGACGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCAGGACCGACTTGGCAACCGTCATCGCTGACGCCGCCAAGGACAACCAGCCCCTCCCCGCCGGCCAGCTCAAGCGGTGGATGATCCAGATTCTCTCTGGCGTCGACGCCTGTCATCGCAACATGGTCCTCCACCGTGATTTGAAGCCCTCGAATCTCTTAATTTCCGAAAATGGCCTCCTCAAGATCGCCGATTTCGGACAGGCAAGAATTCTTACGGAGCCTGGATTTGATGATTCTAATAAGCATGAAGAGTATTCTAGAGACATTGATAATGAGGATACTTGTACTAATACTCACGATGGAAATGCAACATGCACCACAAGTGACATAAACAGGGAAGATGAAGAGAACGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTTGCGGAGCTTTTAACTTTGCAGCCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTCAGTAGAATCATTAGTGTTTTGGGTAACCTTGATGAGAGTGTTTGGGTTGGTTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTATTGAAGCCTGTTTACCAAATAGGTCCCCTGATGAAGTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCAATGGAGTTGCTTAATGACAAGTACTTTAATGAAGAGCCTCTTCCTGTGCCTATTTCTGAGCTGCCAGTTCCTCTTAACAGAAACGGACAAGATGAGGATTCCCCTGGTGGGTGGGGTGATCTGGATGGAATGGAATCTGATTCTGATTTTGATGAGTTTGGCCCGCTCAATATTACTAGAACTGGTACCGGTTTCTCCATACAGTTTCTGAAGAATTCAAGGTACATCGTATCCTTGGAACCTGCCTTTACCTTTTGTGTGGTGCTGTTCAAATGGTAA 1293 0.4896 MEMDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALQLLQGFPNIVVMHEXFWRDDEDAVLVLEFLRTDLATVIADAAKDNQPLPAGQLKRWMIQILSGVDACHRNMVLHRDLKPSNLLISENGLLKIADFGQARILTEPGFDDSNKHEEYSRDIDNEDTCTNTHDGNATCTTSDINREDEENELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFPGTADIDQLSRIISVLGNLDESVWVGCSKLPDYGIISFSKVENPAGIEACLPNRSPDEVALVKRLVCYDPAKRATAMELLNDKYFNEEPLPVPISELPVPLNRNGQDEDSPGGWGDLDGMESDSDFDEFGPLNITRTGTGFSIQFPXKNSRYIVSLEPAFTFCVVLFKW 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4278g00010 431 MobiDBLite consensus disorder prediction 358 391 - -
Vium4278g00010 431 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vium4278g00010 431 SUPERFAMILY Protein kinase-like (PK-like) 15 353 IPR011009 -
Vium4278g00010 431 ProSiteProfiles Protein kinase domain profile. 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4278g00010 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vium4278g00010 431 PANTHER CELL DIVISION PROTEIN KINASE 21 353 - -
Vium4278g00010 431 Gene3D Transferase(Phosphotransferase) domain 1 109 350 - -
Vium4278g00010 431 SMART serkin_6 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4278g00010 431 FunFam Cyclin-dependent kinase F-1 13 107 - -
Vium4278g00010 431 Gene3D Phosphorylase Kinase; domain 1 13 108 - -
Vium4278g00010 431 Pfam Protein kinase domain 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4278g00010 Vium-Chr4278 100528 102556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4278g00010 6 408 Core Cell Cycle Gene Families AT4G28980 56.842 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vium4278g00010 Pkinase 6.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4278g00010 - - vum:124837370 882.478