Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4278g00007 ATGACCACCGTAACGGTCACCACTCGATCTCAGATCCTCCGCCACACCTCCGCATTCACTTCCTCCGTCCTCTCGCAATCCGAACTACGGCGCCGCCTCATCGCCACTCTTCTCCGCGACACTCCGATCTCCGACCAAAAGCACCTCAAACTAGCCGCAGACACTCTAGAAAGCGCGATATCCTTCTCCAGCCCCGCCCTGCGCGCCTCCTCACTGTCTCTCGTTGAGAAGCTCCTCCTCCCTCTCCCCGACTTCGCCCTCTCCTCGCTACTCCTCTCGCTCGCCCACGCCCTCCGTAACCGTCCAACCGAATCCGCCACCAGCCTCCTCCGAATCTTTCACTCCAACAACAGCAGCAACAAAAGCGCTTCACTCGCTAGATCGGAAATCGCTCCTGCACTCTACGAACGCCTCTTCTCTCTACACCTCTTCCCTGTTTTCCGCTGGTTCGATCAGCAGAGGACGAAGATTCTCTCCTCCACTCCCTCAACCTCCATACATGAAAATGATTACTCGGTTTCTGAGGAGTACTCGGTGGTGCTGCCTTGCGCTAAGGTGCTATCGAAGATGAGCGAGGAGCAGGCCGCAAAGCTCCGGGAGGTGGAGAAAGAGTACGAAGAGGTTCTCGACGACAACTGTAGGGTTCTCGCAGAATATTTCAAAGAGGTTTTGGTGAACGAGAACAGTGACGCGGGGATTAGTCCACCGTCGTTGATAATGAAGAGCGGTGCTGAAGGTGGCGGCAGGGAGAACATAAGGGAGGAAATAACGCGAACGAATCTGTTGGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAGCATCTGTTGAACTATTGAGCCCCAGTTCCAGCAGAAGATCTTCCCAGGAACCATTTTATCCTCAAAGAGTCTTTTCGAGAATTCTCAAACCCAAAAATCCTTCGAAATCTTGGACAACGACAGTCTATTTAAACTCAACCGCTGACGCCGATTTTTCTTCAGACGAGAGTTTGGTTAGTTCTTCTTCAGATTCTGAGGCAGAAAATGAGGAAAAGGACAAAATCGCATTGTTGGAGCCTCGACAAAGCCAAATTCAAGAACAAATGCAAACCATCTTCAAACAATCTAGTGGTTCACCAGATTATCCTATGGCCGACTTCGATAACCCGCTGCATGAAATTGGGAAACATGCACCCCCCAAGGACTTTGTCTGTCCAATAACAAGTCACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACGTATGAACGTAAAGCTATCGAGGAATGGTTCAACAGAGGGAACTTAACCTGTCCCATCACTCGCCAGAAGCTGCAAAACACTCAGCTTCCCAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGATCGCAACCCTCATTTGGTCCAACCGCCGTATGAGAGTCCATACGAAGATACTGAGGCAGTTGTGCAGTCAACAACGGCTTCAACTTCTCCTAATAGCGTTATAACCCAAGCCACAGTTGACGGGATGATGAGTGAGTTACGCTGTGCCATCAATAATCTGTACATGTCAGAGGTTCTCAAGGAATCGGAAATGGCGGTGCTTCAAGTTGAAAAGTTCTGGAGAGGAGTGAATCTTGGAGTGGATATCCACAGAATGTTAGTAAAACCTGCGGTAATCAATGGATTTATGGAGATTCTTTTCAATTCTGTGGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTAGCCGAGATGGGGTCAAGGGACAACGCTGTAATCGAGACTCTCACCCGTGTGAAGACTGATGTAGAATGTATCATGGCTCTTTTCAAGAACGGATTGACAGAGGCTGTTGTGTTGTTGCATCTGCTAAACCCTCCCATCACTAGTCTTGCGGAGATGGCCATAGTGGAGTCTCTCATAACGGTTTTGAATACGAAAGAGGAAGAATCGGTTACGATGTGTTTGAAGCCAAAAACAGCTGCAGTGCTTTTACTTGCCAGGATAACTCGAAGCAGTGAAGAGATAATTGCATCATCGGTTGTCAATACCCTTTTCTCTGAAAATGCAATTGGAACTATTGTCAGCAGTTTTGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTAGAGATCTTATTGAGGTGCATGGAAGAAGATGGGACTTGCAGAAAGAATATTGCTGATAAAGCAGAGTTGTCACCACTTATGGAAACCTTAATCGGTGCAGATGATGGAGAGCGTTTTAAGATTATTCAGTTTTTTGATGAGTTGGTCAAATTAAACAGGAGGACATTCACTGAACAAATTCTCCATATTATAAAGGAAGAAGGACCATTTAGCACAATGCATACTCTTCTTATTTATTTGCAGGCAGCTCCTCACGATCATTGTCCAGTTATGGCTGGCCTCTTACTCCAACTTGATCTTCTGGATGAGCCAAGAAAAATGAGCGTATACCGTGAAGAGGCTATGGATACTCTTATTGCATGCCTGAGAAACACAGATTTCCCCGTTACCCAATTAGCAGCTGCAGATACAATCATGTCACTGCAAGGGAGCTTCGACTTCTTCGGAAACCCTCTATGCAGAGAAGTCCTCCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAATCTTGTACTGGTGGGCCATCAGATTAGCAACTCCAGTCCAGAAATTGATATAACTCCAGAAGACGAGAAGGCAGCTGATGATTCGGAAAGAAGAATTGCATATGTTCTAGTTAGCCATGAATTTGGCACTATTTTTGAGGCTTTAGCTGATGGCATGAAGAGCCGAAATACAGAACTACGATCAGCATGCTTTATATCAGCTACCTGGCTCACGTACATGTTGAGCATTCTACCGGATACAGGTATACAAGTACCAGCTCGTGCTTGTTTGCTGAAGCAGTTCATAGCTAAATTTAATTCGGCTCGGGATGTAGAAGACAGAATCCTTTCTATGGTTGCTCTCAATAGCTTTCTTCAGTTCCCTGAAGGCTTAGGTGATCTAACTTCCTACACTAAGGATATCTTAAGAGGATTGAGAGAGCTGAAGAGATCCTGTCCCTTGGCATCTAAAATGCTAAAATCTCTGGTTGAAGAAAATGAATCTAAAGCGGACATATGGATACATAAAGAGCTCATAAAAGAAGACTGCAGCGAAAATGGAGAGGTGGTGTCTGTCACGTGCTTTAAGGATAAAATATTTTCTGGTCATACAGATGGGACGATTAAGGTCTGGACATTAAAGAATAATTTATTCCATCTGTTGCAAGAAATCCAAGAACATACTAAAGCAGTGACAAACTTGGTGATTTCAGAGTCTGGTGACAGGCTATAAAGTGGTTCACTTGACCGAACTTCAAAGGTCTGGTCCATTGGAAAAGCAGCAATACATTGTGTACAGGTGTATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCTTAGCTTGTTTCGTTCCGCAGGGCGCCGGTGTCAAGGTTCAGACACTGAATGGAGAGTCAAAAGTGTTAAATTCTAGCAAATATGTGAAGTGTTTGACTCATGTTGATGGGAAGTTATATTGTGGATGCCATGACAGCAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTCAACACTATTCAAAGTGGTTATAAAAGATTACTTGCGAAAGCAAACCCTATTCATGCAATACAAATTCATGGTGAACTTATATATGCAGCCGGCTCTTCCATGGATGGATCTTCTATAAAGATATGGAACAGTTCCAGTTACAGTATGGTTGGATCACTGCAAACTGGATCTGAAGTGCGGACTATGGCAGTGAGCTCAGGATTGATTTATCTGGGGTGCAAAGGAGGTACTGTGGAAATTTGGGATAAGAAGAAAAGCAGTAAAGTTGACACGTTGCAAATGGGTACCAATTGTAGGGTCAATTGCATGGCTCTAGACAGGAATGAAGAAGTTTTGGTAATTGGAACTTCAGATGGACAAATTCAGGCTTGGGAAATGAATTAA 4008 0.4496 MTTVTVTTRSQILRHTSAFTSSVLSQSELRRRLIATLLRDTPISDQKHLKLAADTLESAISFSSPALRASSLSLVEKLLLPLPDFALSSLLLSLAHALRNRPTESATSLLRIFHSNNSSNKSASLARSEIAPALYERLFSLHLFPVFRWFDQQRTKILSSTPSTSIHENDYSVSEEYSVVLPCAKVLSKMSEEQAAKLREVEKEYEEVLDDNCRVLAEYFKEVLVNENSDAGISPPSLIMKSGAEGGGRENIREEITRTNLLENGRYNPIWSEREASVELLSPSSSRRSSQEPFYPQRVFSRILKPKNPSKSWTTTVYLNSTADADFSSDESLVSSSSDSEAENEEKDKIALLEPRQSQIQEQMQTIFKQSSGSPDYPMADFDNPLHEIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVQPPYESPYEDTEAVVQSTTASTSPNSVITQATVDGMMSELRCAINNLYMSEVLKESEMAVLQVEKFWRGVNLGVDIHRMLVKPAVINGFMEILFNSVEPQVLQAAVFLLAEMGSRDNAVIETLTRVKTDVECIMALFKNGLTEAVVLLHLLNPPITSLAEMAIVESLITVLNTKEEESVTMCLKPKTAAVLLLARITRSSEEIIASSVVNTLFSENAIGTIVSSFGADLAKERIAAVEILLRCMEEDGTCRKNIADKAELSPLMETLIGADDGERFKIIQFFDELVKLNRRTFTEQILHIIKEEGPFSTMHTLLIYLQAAPHDHCPVMAGLLLQLDLLDEPRKMSVYREEAMDTLIACLRNTDFPVTQLAAADTIMSLQGSFDFFGNPLCREVLLKRAGIDKSSRNLVLVGHQISNSSPEIDITPEDEKAADDSERRIAYVLVSHEFGTIFEALADGMKSRNTELRSACFISATWLTYMLSILPDTGIQVPARACLLKQFIAKFNSARDVEDRILSMVALNSFLQFPEGLGDLTSYTKDILRGLRELKRSCPLASKMLKSLVEENESKADIWIHKELIKEDCSENGEVVSVTCFKDKIFSGHTDGTIKVWTLKNNLFHLLQEIQEHTKAVTNLVISESGDRLXSGSLDRTSKVWSIGKAAIHCVQVYDMKDQIHNLVVTNSLACFVPQGAGVKVQTLNGESKVLNSSKYVKCLTHVDGKLYCGCHDSSVQEIHLATGTVNTIQSGYKRLLAKANPIHAIQIHGELIYAAGSSMDGSSIKIWNSSSYSMVGSLQTGSEVRTMAVSSGLIYLGCKGGTVEIWDKKKSSKVDTLQMGTNCRVNCMALDRNEEVLVIGTSDGQIQAWEMN 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4278g00007 1335 Gene3D - 539 847 IPR011989 -
Vium4278g00007 1335 MobiDBLite consensus disorder prediction 329 349 - -
Vium4278g00007 1335 Coils Coil 696 716 - -
Vium4278g00007 1335 SUPERFAMILY WD40 repeat-like 1063 1334 IPR036322 GO:0005515
Vium4278g00007 1335 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1334 - -
Vium4278g00007 1335 CDD RING-Ubox_PUB 395 447 IPR045210 -
Vium4278g00007 1335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1301 1335 - -
Vium4278g00007 1335 SUPERFAMILY ARM repeat 34 998 IPR016024 -
Vium4278g00007 1335 SUPERFAMILY RING/U-box 392 469 - -
Vium4278g00007 1335 Gene3D - 1042 1158 IPR015943 GO:0005515
Vium4278g00007 1335 Gene3D - 1159 1335 IPR015943 GO:0005515
Vium4278g00007 1335 ProSiteProfiles U-box domain profile. 393 468 IPR003613 GO:0004842|GO:0016567
Vium4278g00007 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1092 1125 IPR001680 GO:0005515
Vium4278g00007 1335 ProSitePatterns Trp-Asp (WD) repeats signature. 1320 1334 IPR019775 -
Vium4278g00007 1335 Pfam U-box domain 395 465 IPR003613 GO:0004842|GO:0016567
Vium4278g00007 1335 Coils Coil 184 211 - -
Vium4278g00007 1335 SMART WD40_4 1293 1333 IPR001680 GO:0005515
Vium4278g00007 1335 SMART WD40_4 1043 1080 IPR001680 GO:0005515
Vium4278g00007 1335 SMART WD40_4 1212 1251 IPR001680 GO:0005515
Vium4278g00007 1335 SMART WD40_4 1254 1290 IPR001680 GO:0005515
Vium4278g00007 1335 SMART WD40_4 1085 1124 IPR001680 GO:0005515
Vium4278g00007 1335 SMART Ubox_2 397 461 IPR003613 GO:0004842|GO:0016567
Vium4278g00007 1335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 470 IPR013083 -
Vium4278g00007 1335 ProSiteProfiles Trp-Asp (WD) repeats profile. 1301 1335 IPR001680 GO:0005515
Vium4278g00007 1335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1092 1125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4278g00007 Vium-Chr4278 80395 88047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4278g00007 395 472 U-box Gene Family AT1G71020 47.436 3.98e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4278g00007 - - vun:114176884 2362.8