Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4278g00006 ATGAACAGAGGTGTCTTGCAAAGCTCACCGGTGCAACAAATGATGGCTGCAAACCCTAACAATTGGTGGAACATCAACACCATGCGCCCTCCTCCGCCTTCTCCTCCTCCTCCTTCTCAGCCTTCTTCTCCGTTCTTCTCCACTCCTTCCAACTTTCTAACTCCGTATAATACCTCTTCATCTCTTCCTCTTCCTTCTTGGCATGATAACAATCAAGAACTACCTGAGTCATGGAGCCAGCTTCTCATGAGTGGGATGGTGTCTGAAGAAGAGAAAGGGGCTATGTGCCAGGTTCAGCAACAAATGCTGAGTCAGGCTTCAAGGGTTCCTATTGTTGATGTTAAGCAAGAAGGCTCGGTGAACAGCTACGTGTACGGTCATGGAAACGAAGAGTTTCACCCAGCAAAGCCAACTTGGCCTCAAATAGTGCCTTCTTCTTCCCCTAAATCATGTGTAACAAGTTTCAGCAGCAGCATGTTAGATTTCTCTAACAGTAACACAGATGCTAGGCCTCCTCCTCCAGACCCATCATCAGAGTGTAATAGCACTGCAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACGCAGACGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCCCCGTTTGGAAAGACTGACACGGCGTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGTAATGGATCAGGAAACATGAGGCAGCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAACGAAAACTGCTTGAAGAGGAAAGCAACTAGTGAGAAGGATTCTGAAGAAGAGGCGAAGAAGGATCTAAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACACTGCAAGTTGGAAGTGACAACGGAGCTGATTATTGGGCACCAGCTTTTGGAAGTGGCTTTCGGTAG 1026 0.4717 MNRGVLQSSPVQQMMAANPNNWWNINTMRPPPPSPPPPSQPSSPFFSTPSNFLTPYNTSSSLPLPSWHDNNQELPESWSQLLMSGMVSEEEKGAMCQVQQQMLSQASRVPIVDVKQEGSVNSYVYGHGNEEFHPAKPTWPQIVPSSSPKSCVTSFSSSMLDFSNSNTDARPPPPDPSSECNSTAAGGAFKKARVQPPTTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGNGSGNMRQQQSVQGEKNCIFPEDPGQLLNENCLKRKATSEKDSEEEAKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGSGFR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4278g00006 341 MobiDBLite consensus disorder prediction 21 52 - -
Vium4278g00006 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 254 IPR036638 GO:0046983
Vium4278g00006 341 Coils Coil 290 310 - -
Vium4278g00006 341 MobiDBLite consensus disorder prediction 26 44 - -
Vium4278g00006 341 MobiDBLite consensus disorder prediction 161 199 - -
Vium4278g00006 341 Gene3D - 201 255 IPR036638 GO:0046983
Vium4278g00006 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Vium4278g00006 341 FunFam transcription factor bHLH68 isoform X1 201 254 - -
Vium4278g00006 341 CDD bHLH_AtbHLH_like 202 251 IPR045239 -
Vium4278g00006 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4278g00006 Vium-Chr4278 61407 64854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4278g00006 1 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 44.444 1.93e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4278g00006 - - gmx:100785156 569.696