Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4278g00001 ATGTCTGAGCTATTGGAAGAGGTTCCTTCAATGAAAGGAGGGTGCGAAGAAGGGTTGAACCTGAGGGCCACTGAGCTAAGGCTTGGGTTGCCAGGGCGTGAGTCACCTGAGAGGGAGGGCGTGTTTAAGACTGTGGTGGTGTCTGGGGCCAAAAGGGGTTTCTCTGATGCCATTGATGGAGGTTCTGGAAACTGGAATGGTGGATCTGAAGTGGGTTTGGGAAAAGATGTTGTCTTGTTCTCTCCGAGTGGAACTGTTAGTGCTGCCAAGTCTCTCACCCTCACTGCAACAGACTGCACCAAACAGCCTACTGTTTTGGGTGCTTCTGTTCTCAAAGAAACTTTTCCACACTCTCCAAAACCGCTGCATGAGAAGAAACCTCAGATTTCTGCTCCAGCTGCGAAGGCGCAAGTTGTGGGGTGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTCAGCCTCAGAAGAATGAAGATGCTGAGGCAGAAGCCAAGTCTGAATGTCTTTATGTTAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTTAATAGTTTTGGCACTTACAAGGAACTCTCTTTGGCACTCGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTTATGGGATTTCTTCTAGTCGAGAAAAATTAAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTTCTTACATATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGAATCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGGGCGGTGGAAAAGTGCAAAAGTCGCAACTAA 873 0.4628 MSELLEEVPSMKGGCEEGLNLRATELRLGLPGRESPEREGVFKTVVVSGAKRGFSDAIDGGSGNWNGGSEVGLGKDVVLFSPSGTVSAAKSLTLTATDCTKQPTVLGASVLKETFPHSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMAQPQKNEDAEAEAKSECLYVKVSMEGAPYLRKVDLNSFGTYKELSLALEKMFSCFTISQCGSYGISSSREKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAVEKCKSRN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4278g00001 290 Gene3D - 163 284 - -
Vium4278g00001 290 SUPERFAMILY CAD & PB1 domains 166 271 - -
Vium4278g00001 290 Pfam AUX/IAA family 24 281 IPR033389 -
Vium4278g00001 290 ProSiteProfiles PB1 domain profile. 169 272 IPR000270 GO:0005515
Vium4278g00001 290 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 277 IPR003311 GO:0005634|GO:0006355
Vium4278g00001 290 FunFam Auxin-responsive protein 164 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4278g00001 Vium-Chr4278 11373 13835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4278g00001 172 280 B3 DNA Binding Superfamily AT4G23980 32.110 8.61e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vium4278g00001 AUX_IAA 1.1e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4278g00001 K14484 - gmx:100778529 481.485