Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4277g00001 ATGACGACTTTTCTGAATGGAATCATTTCCTTGTGGTTCTTCATTCCCATGCTAGCATGCTTCATCTCACTAGCCTTTCACACCATATTCAATCTTCTACCCAAACTCAACTCCAAATCAGGAAAAAACTTACCACCATCTCCTCCAAAGCTTCCAATAATAGGAAACCTACACCAACTTGGCAACCACATTCACCGCACTCTCCAATCCTTTGCTCAAACCTATGGCCCTTTGATGTTGCTTCACTTTGGGAAGGTGCCAGTTCTTGTGGTCTCAAATAATGAAGCAGCACGTGAGATTCTGAAAAACCAAGACCACGTTTTCTGTAACAGACCACATCGTAAGATGTCTGATATCATCATATATGATTCCAAAGATGTGGCATCCGCTCCCTACGGAAAATACTGGAGGCAGATAAGGAGTATTTGTGTCTTGCATATTCTCAGTGCAAAAAAGGTTCAATCCTTTGGTGCAGTCAGAGAGGAGGAAATCACCATAATGATGAAAGAGATTAAACAGTGTTGTTCTTCTTTGATTCCTGTGAATTTAACTGAATTATTTTCTACAGTCACGAATGACATAGTGTGTAGAGCTGCTCTCGGAAGGAGATACAGTGGAGAAGGACGGAGACAGCTTTGGGAGCCACTGAATGAAATGATGGAGCTGTTCGGTGCTCCATTTATAGGGGACTACATACCTTGGCTTGATTGGGTGGGAAGAGTTAATGGAATGTATGATAGGGCAAAGAGAGTGGCTAAAGAGCTTGATGAATTTTTCGATGAAGTTGTTGATGAGCATGTAAGTAGAAGAGGGCATGATGTGCATGGTGATGATGATGATGAAGAAGAAGAAGAAGAGGAGAATGATCTGGTGGACATTTTGTTGAGGCTCCAAAAGAAAAACAGAATGGGGTTTCAGATTGATAGAACAACCATAAAGGCTTTGATCTTGGATATGTTTGTGGCAGGTACTGATACCAGCTCCTCAATCCTGGGATGGATGATGACAGAACTCTTGAGGCACCCAAATGTGATGCAGAAGCTAAAAGATGAGATAAGGAATGTGGTTAGTGGTAGAACTCGCATAACTGAGGAAGATTTAAGCAGCATGCCTTATTTGAAAGCAGTGATTAAAGAAAGTTTTCGATTGCATCCCCCAGGTCCGTTGTTGGTTCCAAGGGAATCCATGGAAGATGCCAAAGTGATGAACTATGACATTGCAGCAGGCACACAAGTAATAGTGAATGCATGGGCAATAGCAAGAGATCCTTGTTACTGGGAAAATCCTGAAGAGTTTGAAGCAGAAAGATTCTTAAAGAGTTCAATAGATGTGAAAGGACATGATTTTGAAGTGATACCATTTGGAGCAGGAAGAAGGGGTTGTCCAGGAATAATGTTTGCCATGAATGTGATTGAGTTGGTCATAGCAAACCTTGTTCATCAGTTTAATTGGGAAGTGCCAAGTGGAGTAGTGGGAGATCAGACACTCGACGTGACTGAAACTGCAGGGTTGACCAGTCATAGAAAATTTCCTCTCATAGCATTTGCCTCCTACCATGCATAA 1563 0.4197 MTTFLNGIISLWFFIPMLACFISLAFHTIFNLLPKLNSKSGKNLPPSPPKLPIIGNLHQLGNHIHRTLQSFAQTYGPLMLLHFGKVPVLVVSNNEAAREILKNQDHVFCNRPHRKMSDIIIYDSKDVASAPYGKYWRQIRSICVLHILSAKKVQSFGAVREEEITIMMKEIKQCCSSLIPVNLTELFSTVTNDIVCRAALGRRYSGEGRRQLWEPLNEMMELFGAPFIGDYIPWLDWVGRVNGMYDRAKRVAKELDEFFDEVVDEHVSRRGHDVHGDDDDEEEEEEENDLVDILLRLQKKNRMGFQIDRTTIKALILDMFVAGTDTSSSILGWMMTELLRHPNVMQKLKDEIRNVVSGRTRITEEDLSSMPYLKAVIKESFRLHPPGPLLVPRESMEDAKVMNYDIAAGTQVIVNAWAIARDPCYWENPEEFEAERFLKSSIDVKGHDFEVIPFGAGRRGCPGIMFAMNVIELVIANLVHQFNWEVPSGVVGDQTLDVTETAGLTSHRKFPLIAFASYHA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4277g00001 520 Gene3D Cytochrome P450 33 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 Pfam Cytochrome P450 45 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Vium4277g00001 520 CDD CYP71-like 74 512 - -
Vium4277g00001 520 FunFam Cytochrome P450 83B1 32 515 - -
Vium4277g00001 520 PRINTS E-class P450 group I signature 311 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS E-class P450 group I signature 331 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS E-class P450 group I signature 374 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS E-class P450 group I signature 190 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PANTHER CYTOCHROME P450 71B11-RELATED 26 516 - -
Vium4277g00001 520 SUPERFAMILY Cytochrome P450 45 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS P450 superfamily signature 322 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4277g00001 520 PRINTS P450 superfamily signature 375 386 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4277g00001 Vium-Chr4277 15561 17735 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4277g00001 17 517 Cytochrome P450 AT3G48280 48.509 1.34e-179 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4277g00001 - - gmx:100810137 740.725