Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4276g00001 ATGGAAATGGAGAGGTACACCAGTCAGCGGTGGCGACCTACTGATGATCAGCTCAAAATGATGACCAATATCTACAATTACGGGGTCACACATCCCAGCAGAGCCCAAGTCGTCGAGATTGCGTCTCGACTAAGGGTTTTCGCAGAAGCCACTGAATACAATGTGCACTGCTGGTTCAACAACCACGGCAATCGGGTCAGACGTCTACAAGCGGAGATAGACCCCATTGGCACCGTCTTTTCGTTGTTACCGCAGTACATGTATGAATATGACTGGGTGATCATGAGGGCGCCGAGGCTGCTGGATTTGTTCCCTGTTCCGATCATCATCGACGACGACAGGGACGAACGACAAATCCCTCCACCCATGCTTCTCACATTCCGAACCAGAGCTCCCTCGACGGAGCTCTCCCTTAGACCACCACAACCAGCTCGAGAATTTTTTCGTTGA 450 0.5156 MEMERYTSQRWRPTDDQLKMMTNIYNYGVTHPSRAQVVEIASRLRVFAEATEYNVHCWFNNHGNRVRRLQAEIDPIGTVFSLLPQYMYEYDWVIMRAPRLLDLFPVPIIIDDDRDERQIPPPMLLTFRTRAPSTELSLRPPQPAREFFR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4276g00001 149 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
Vium4276g00001 149 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vium4276g00001 149 CDD homeodomain 10 70 IPR001356 GO:0003677
Vium4276g00001 149 Gene3D - 8 73 - -
Vium4276g00001 149 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
Vium4276g00001 149 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 68 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4276g00001 Vium-Chr4276 915 1443 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4276g00001 7 72 Wox Gene Family AT5G59340 39.394 5.16e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium4276g00001 Homeodomain 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4276g00001 - K09380 vum:124821070 275.404