Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4274g00004 ATGGCGACGAGAGCAGCAGTGGCGGCGCCACGCGTTTTGCGACGCTTTTTCTGCTCAAACTCTGCTTCTTCTACTTTCCCTTTCGTTCCTACGCCGCCTGCGGGCGCTGTCGCCACTCCTGCACGACCCACGGCGGAGCCCAACACCAATCTCTTTGTCTCTGGGCTTAGCAAACGGACTACAACAGAAAAGCTTCGGGAAGAATTTTCAAAGTTTGGTGAAGTCGTTTATGCAAGGGTGGTAGCTGATCGAGTCTCAGGCTACTCTAAGGGGTTTGGTTTTGTGCAATATGCAACAATAGAAGATGCTGCAAAGGGCATTGAAGGAATGGATGGCAAGGTAAGCTAG 348 0.5172 MATRAAVAAPRVLRRFFCSNSASSTFPFVPTPPAGAVATPARPTAEPNTNLFVSGLSKRTTTEKLREEFSKFGEVVYARVVADRVSGYSKGFGFVQYATIEDAAKGIEGMDGKVS 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4274g00004 115 SUPERFAMILY RNA-binding domain, RBD 40 113 IPR035979 GO:0003676
Vium4274g00004 115 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 115 IPR000504 GO:0003723
Vium4274g00004 115 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 113 IPR000504 GO:0003723
Vium4274g00004 115 Gene3D - 30 115 IPR012677 -
Vium4274g00004 115 PANTHER NUCLEOLAR PROTEIN 8 19 113 - -
Vium4274g00004 115 SMART rrm1_1 50 115 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4274g00004 Vium-Chr4274 33217 36360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4274g00004 50 114 Eukaryotic Initiation Factors Gene Family AT4G34110 43.077 1.47e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4274g00004 - - vum:124837364 194.512