Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4272g00002 ATGGCATCTCGATGCTATTTCTCTGTTCTTCTCCATGCCTTTGTGTTTGCAACTGTTGCAACCTTAGGTTTCTCTCAGTTGACACCTAATTACTATGATTACTCTTGCCCCAATGCTTTGAGCACCATCAACAGTGTGGTAGAGGCTGCAGTGCAGAAAGAGAACCGAATTGGCGCTTCATTGCTACGCTTGCACTTCCATGATTGTTTTGTTAACGGTTGTGATGGTTCAATTCTTCTGGACCCTTCACCCACCATTGACAGTGAAAAGAATGCACTTCCAAATATTCAGTCTGTAAGAGGATTTGAAGTTGTGGATGAGATCAAGCAAGCTGTGGACCAAGCATGTGGAAAATCAGTCGTTTCATGTGCAGACATATTGGCTATTGTCGCTCGTGACTCTGTTGTTGCGTTAGGTGGGCCAACCTGGGAAGTGCAACTGGGAAGAAGAGACTCCACCACAGCAAGCCGTGAAGCAGCAAATGCAAACATTCCGGCACCATTTTTCAGCCTCTCTGAACTCATCACCAACTTCAAGAACCATGGTCTTGATGAGAAGGATCTTGTTGTTCTTTCTGGAGGCCACACCATTGGATATGCACGTTGTATTAACTTCAAGGCTCATATCTACAATGATTCAAACATCGATCCCAACTTTGCACAATATCTCAAATACATTTGCCCTATAAATGGTGGTGACCAAAACCTTGCTCCTTTGGACTCAACAGCCGCGAATTTTGACGTATCCTACTACTCTAATTTGGTTAACAAGAATGGAGTTCTTCACTCTGATCAAGAACTCTTCAATGGTGGTTCTACTGATTCACTTGTCCAACAGTACAGCTACGACAACCAAGCTTTCTTCCAAGACTTCGCCAATTCTATTATCAAGATGGGAAATATTCAGCCTCTTACTGGGGATCAAGGTGAAGTTCGTGTTAATTGCAGGAAAGTGAACTATTAA 963 0.432 MASRCYFSVLLHAFVFATVATLGFSQLTPNYYDYSCPNALSTINSVVEAAVQKENRIGASLLRLHFHDCFVNGCDGSILLDPSPTIDSEKNALPNIQSVRGFEVVDEIKQAVDQACGKSVVSCADILAIVARDSVVALGGPTWEVQLGRRDSTTASREAANANIPAPFFSLSELITNFKNHGLDEKDLVVLSGGHTIGYARCINFKAHIYNDSNIDPNFAQYLKYICPINGGDQNLAPLDSTAANFDVSYYSNLVNKNGVLHSDQELFNGGSTDSLVQQYSYDNQAFFQDFANSIIKMGNIQPLTGDQGEVRVNCRKVNY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4272g00002 320 Gene3D - 30 319 - -
Vium4272g00002 320 Gene3D Peroxidase, domain 2 165 298 - -
Vium4272g00002 320 FunFam Peroxidase 30 170 - -
Vium4272g00002 320 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vium4272g00002 320 ProSiteProfiles Plant heme peroxidase family profile. 26 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PANTHER PEROXIDASE 72-RELATED 25 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 Pfam Peroxidase 44 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Vium4272g00002 320 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 FunFam Peroxidase 165 298 - -
Vium4272g00002 320 SUPERFAMILY Heme-dependent peroxidases 26 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 CDD secretory_peroxidase 26 318 IPR033905 GO:0004601|GO:0042744
Vium4272g00002 320 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4272g00002 320 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4272g00002 Vium-Chr4272 108347 114158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4272g00002 25 319 Peroxidase AT5G05340 59.060 1.03e-125 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4272g00002 K00430 - gmx:100802035 570.852