Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4270g00014 ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGACGACTATTACTACGATGATGATTATGACGACTATGATTACGATGATGTCGATGCAGATGGTCATGGAGGACCTGATACAAAGCAAGAGACCATCAAGCCAGGTCTTTGGCAATGCTCCATTTGCACTTATGACAATGACGAGAGTATGGCATTTTGTGATATATGTGGTGTTGTACGAAGACCCTCGCATAACATTGGAACTTCCGACAGTAGCAAAATAGCTGAAGACATACACAAAATTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAATCATTACCACAACAGATTCCCAAAGAGGTTATATTATTTCCAAAGCTGGGTGATGGTTTCCTGACAGATGGCAGTATCTTCTACAAGCTTGAGAATGTCCGGGGAGAATTTCATGAAATTCATAAAGATTTTAGTACTCAGAGTCATCCACACCTAAACATAGATCCTTTCAAGTTTGACGTTCCATCTCCTGATGATGTCATTTTTACTGGTCTACATTCTTCCAAAGTGGGATTGAAAGACAATGTTACAAACAAAAAAAGTTCGAAACTTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAGACAACTTATCTTCCTTAACGCAAAAGAGCAGGAAGGATAGTTCAGCCCAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAACCTTCAAACAGCTTGTCAGAATCTCTGCCAAAAGGCAAAGGTGAAAATATTAATAAAATAAACTCTTTGAAAAGTGGTACAATTGATATTCAATTGAGCAAAGAGAAGTCTGGTAGTTTGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAGTTTCCATTCTATCAAAGATGGAAAAGCGGAAAGTATTTCCAGCAATTTCAACAACATGACTGCTGATGTAAGATCTGGAAATTCAGACAATGCTAATGCTAAGAAACCTCATTCACTTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTACGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACTGTTGCGGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAACAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTCATAGTTGCTGTAAATAAGATGGATGCTGTTGCATACACCCAGGATCGATTTGATTTTATAAGGCAGCATCTGGGAGCTTTTCTGCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCTATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATCCTCGTTTCAAAAACTGGTATAATGGACCTTATCTGTTAGATGCGATTGACTCTCTTCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTACGCTTGGACAGGTATCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCTAAGGTCTTAGTTATGCCTTCAGCTATAGTGGGAACGGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCCGTTGCAGCTGCTAGGAATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAGAAGTCGCCTCGATGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGCTTTGAACGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGCGTTGTAACAAGAATAATTGAGGACGAAGGTTAA 2370 0.4148 MPRKVSYGLDLDDDYYYDDDYDDYDYDDVDADGHGGPDTKQETIKPGLWQCSICTYDNDESMAFCDICGVVRRPSHNIGTSDSSKIAEDIHKIPGASKLARSLFQSLPQQIPKEVILFPKLGDGFLTDGSIFYKLENVRGEFHEIHKDFSTQSHPHLNIDPFKFDVPSPDDVIFTGLHSSKVGLKDNVTNKKSSKLSSSIREINELSVQSNAESSDNLSSLTQKSRKDSSAQSKLSKNVATGLQASGKPSNSLSESLPKGKGENINKINSLKSGTIDIQLSKEKSGSLSALSKVKESDKNSFHSIKDGKAESISSNFNNMTADVRSGNSDNANAKKPHSLVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGNKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTQDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDPRFKNWYNGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTTLGQVSACGKLEAGALRSGSKVLVMPSAIVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAAARNLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVALNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4270g00014 789 MobiDBLite consensus disorder prediction 207 268 - -
Vium4270g00014 789 FunFam elongation factor 1-alpha isoform X4 679 788 - -
Vium4270g00014 789 Gene3D - 349 583 IPR027417 -
Vium4270g00014 789 CDD HBS1-like_II 588 672 - -
Vium4270g00014 789 Pfam Elongation factor Tu GTP binding domain 361 576 IPR000795 GO:0003924|GO:0005525
Vium4270g00014 789 MobiDBLite consensus disorder prediction 207 259 - -
Vium4270g00014 789 Gene3D Translation factors 586 675 - -
Vium4270g00014 789 PRINTS GTP-binding elongation factor signature 421 429 IPR000795 GO:0003924|GO:0005525
Vium4270g00014 789 PRINTS GTP-binding elongation factor signature 441 451 IPR000795 GO:0003924|GO:0005525
Vium4270g00014 789 PRINTS GTP-binding elongation factor signature 457 468 IPR000795 GO:0003924|GO:0005525
Vium4270g00014 789 PRINTS GTP-binding elongation factor signature 362 375 IPR000795 GO:0003924|GO:0005525
Vium4270g00014 789 PRINTS GTP-binding elongation factor signature 502 511 IPR000795 GO:0003924|GO:0005525
Vium4270g00014 789 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 681 785 IPR009001 -
Vium4270g00014 789 SMART zf_4 47 71 IPR001876 -
Vium4270g00014 789 SUPERFAMILY Translation proteins 581 675 IPR009000 -
Vium4270g00014 789 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 358 582 IPR000795 GO:0003924|GO:0005525
Vium4270g00014 789 CDD EF1_alpha 362 581 - -
Vium4270g00014 789 Gene3D Translation factors 679 788 - -
Vium4270g00014 789 CDD HBS1_C_III 676 784 - -
Vium4270g00014 789 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Vium4270g00014 789 Gene3D - 41 78 - -
Vium4270g00014 789 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Vium4270g00014 789 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Vium4270g00014 789 Pfam Elongation factor Tu domain 2 609 671 IPR004161 GO:0005525
Vium4270g00014 789 FunFam Translation elongation factor EF-1 585 675 - -
Vium4270g00014 789 Pfam Elongation factor Tu C-terminal domain 677 784 IPR004160 -
Vium4270g00014 789 PANTHER TRANSLATION FACTOR 356 784 - -
Vium4270g00014 789 FunFam Elongation factor 1 alpha-like protein 351 582 - -
Vium4270g00014 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 603 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4270g00014 Vium-Chr4270 69494 77152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4270g00014 158 787 Eukaryotic Initiation Factors Gene Family AT5G10630 60.794 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4270g00014 K14416 - gmx:100801724 1328.15