Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4270g00013 ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGACGACTATTACTACGATGATGATTATGACGACTATGATTACGATGATGTCGATGCAGATGGTCATGGAGGACCTGATACAAAGCAAGAGACCATCAAGCCAGGTCTTTGGCAATGCTCCATTTGCACTTATGACAATGACGAGAGTATGGCATTTTGTGATATATGTGGTGTTGTACGAAGACCCTCGCATAACATTGGAACTTCCGACAGTAGCAAAATAGCTGAAGACATACACAAAATTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAATCATTACCACAACAGATTCCCAAAGAGGTTATATTATTTCCAAAGCTGGGTGATGGTTTCCTGACAGATGGCAGTATCTTCTACAAGCTTGAGAATGTCCGGGGAGAATTTCATGAAATTCATAAAGATTTTAGTACTCAGAGTCATCCACACCTAAACATAGACAATGTTACAAACAAAAAAAGTTCGAAACTTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAGACAACTTATCTTCCTTAACGCAAAAGAGCAGGAAGGATAGTTCAGCCCAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAACCTTCAAACAGCTTGTCAGAATCTCTGCCAAAAGGCAAAGGTGAAAATATTAATAAAATAAACTCTTTGAAAAGTGGTACAATTGATATTCAATTGAGCAAAGAGAAGTCTGGTAGTTTGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAGTTTCCATTCTATCAAAGATGGAAAAGCGGAAAGTATTTCCAGCAATTTCAACAACATGACTGCTGATGTAAGATCTGGAAATTCAGACAATGCTAATGCTAAGAAACCTCATTCACTTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTACGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACTGTTGCGGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAACAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTCATAGTTGCTGTAAATAAGATGGATGCTGTTGCATACACCCAGGATCGATTTGATTTTATAAGGCAGCATCTGGGAGCTTTTCTGCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCTATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATCCTCGTTTCAAAAACTGGTATAATGGACCTTATCTGTTAGATGCGATTGACTCTCTTCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTACGCTTGGACAGGTATCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCTAAGGTCTTAGTTATGCCTTCAGCTATAGTGGGAACGGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCCGTTGCAGCTGCTAGGAATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAGAAGTCGCCTCGATGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGCTTTGAACGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGCGTTGTAACAAGAATAATTGAGGACGAAGGTTAA 2292 0.4158 MPRKVSYGLDLDDDYYYDDDYDDYDYDDVDADGHGGPDTKQETIKPGLWQCSICTYDNDESMAFCDICGVVRRPSHNIGTSDSSKIAEDIHKIPGASKLARSLFQSLPQQIPKEVILFPKLGDGFLTDGSIFYKLENVRGEFHEIHKDFSTQSHPHLNIDNVTNKKSSKLSSSIREINELSVQSNAESSDNLSSLTQKSRKDSSAQSKLSKNVATGLQASGKPSNSLSESLPKGKGENINKINSLKSGTIDIQLSKEKSGSLSALSKVKESDKNSFHSIKDGKAESISSNFNNMTADVRSGNSDNANAKKPHSLVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGNKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTQDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDPRFKNWYNGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTTLGQVSACGKLEAGALRSGSKVLVMPSAIVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAAARNLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVALNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4270g00013 763 MobiDBLite consensus disorder prediction 181 241 - -
Vium4270g00013 763 Gene3D Translation factors 560 649 - -
Vium4270g00013 763 Pfam Elongation factor Tu domain 2 583 645 IPR004161 GO:0005525
Vium4270g00013 763 PRINTS GTP-binding elongation factor signature 415 425 IPR000795 GO:0003924|GO:0005525
Vium4270g00013 763 PRINTS GTP-binding elongation factor signature 336 349 IPR000795 GO:0003924|GO:0005525
Vium4270g00013 763 PRINTS GTP-binding elongation factor signature 476 485 IPR000795 GO:0003924|GO:0005525
Vium4270g00013 763 PRINTS GTP-binding elongation factor signature 395 403 IPR000795 GO:0003924|GO:0005525
Vium4270g00013 763 PRINTS GTP-binding elongation factor signature 431 442 IPR000795 GO:0003924|GO:0005525
Vium4270g00013 763 Pfam Elongation factor Tu GTP binding domain 335 550 IPR000795 GO:0003924|GO:0005525
Vium4270g00013 763 Gene3D - 323 557 IPR027417 -
Vium4270g00013 763 FunFam Elongation factor 1 alpha-like protein 325 556 - -
Vium4270g00013 763 CDD HBS1-like_II 562 646 - -
Vium4270g00013 763 SMART zf_4 47 71 IPR001876 -
Vium4270g00013 763 FunFam elongation factor 1-alpha isoform X4 653 762 - -
Vium4270g00013 763 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 655 759 IPR009001 -
Vium4270g00013 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 577 IPR027417 -
Vium4270g00013 763 PANTHER TRANSLATION FACTOR 330 758 - -
Vium4270g00013 763 Pfam Elongation factor Tu C-terminal domain 651 758 IPR004160 -
Vium4270g00013 763 Gene3D Translation factors 653 762 - -
Vium4270g00013 763 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Vium4270g00013 763 Gene3D - 41 78 - -
Vium4270g00013 763 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Vium4270g00013 763 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 332 556 IPR000795 GO:0003924|GO:0005525
Vium4270g00013 763 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Vium4270g00013 763 MobiDBLite consensus disorder prediction 181 233 - -
Vium4270g00013 763 FunFam Translation elongation factor EF-1 559 649 - -
Vium4270g00013 763 SUPERFAMILY Translation proteins 555 649 IPR009000 -
Vium4270g00013 763 CDD HBS1_C_III 650 758 - -
Vium4270g00013 763 CDD EF1_alpha 336 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4270g00013 Vium-Chr4270 69494 77152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4270g00013 193 761 Eukaryotic Initiation Factors Gene Family AT5G10630 63.796 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4270g00013 K14416 - gmx:100801724 1266.52