Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4270g00012 ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGACGACTATTACTACGATGATGATTATGACGACTATGATTACGATGATGTCGATGCAGATGGTCATGGAGGACCTGATACAAAGCAAGAGACCATCAAGCCAGGTCTTTGGCAATGCTCCATTTGCACTTATGACAATGACGAGAGTATGGCATTTTGTGATATATGTGGTGTTGTACGAAGACCCTCGCATAACATTGGAACTTCCGACAGTAGCAAAATAGATCCTTTCAAGTTTGACGTTCCATCTCCTGATGATGTCATTTTTACTGGTCTACATTCTTCCAAAGTGGGATTGAAAGACAATGTTACAAACAAAAAAAGTTCGAAACTTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAGACAACTTATCTTCCTTAACGCAAAAGAGCAGGAAGGATAGTTCAGCCCAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAACCTTCAAACAGCTTGTCAGAATCTCTGCCAAAAGGCAAAGGTGAAAATATTAATAAAATAAACTCTTTGAAAAGTGGTACAATTGATATTCAATTGAGCAAAGAGAAGTCTGGTAGTTTGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAGTTTCCATTCTATCAAAGATGGAAAAGCGGAAAGTATTTCCAGCAATTTCAACAACATGACTGCTGATGTAAGATCTGGAAATTCAGACAATGCTAATGCTAAGAAACCTCATTCACTTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTACGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACTGTTGCGGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAACAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTCATAGTTGCTGTAAATAAGATGGATGCTGTTGCATACACCCAGGATCGATTTGATTTTATAAGGCAGCATCTGGGAGCTTTTCTGCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCTATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATCCTCGTTTCAAAAACTGGTATAATGGACCTTATCTGTTAGATGCGATTGACTCTCTTCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTACGCTTGGACAGGTATCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCTAAGGTCTTAGTTATGCCTTCAGCTATAGTGGGAACGGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCCGTTGCAGCTGCTAGGAATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAGAAGTCGCCTCGATGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGCTTTGAACGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGCGTTGTAACAAGAATAATTGAGGACGAAGGTTAA 2151 0.4166 MPRKVSYGLDLDDDYYYDDDYDDYDYDDVDADGHGGPDTKQETIKPGLWQCSICTYDNDESMAFCDICGVVRRPSHNIGTSDSSKIDPFKFDVPSPDDVIFTGLHSSKVGLKDNVTNKKSSKLSSSIREINELSVQSNAESSDNLSSLTQKSRKDSSAQSKLSKNVATGLQASGKPSNSLSESLPKGKGENINKINSLKSGTIDIQLSKEKSGSLSALSKVKESDKNSFHSIKDGKAESISSNFNNMTADVRSGNSDNANAKKPHSLVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGNKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTQDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDPRFKNWYNGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTTLGQVSACGKLEAGALRSGSKVLVMPSAIVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAAARNLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVALNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4270g00012 716 Gene3D - 41 78 - -
Vium4270g00012 716 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 608 712 IPR009001 -
Vium4270g00012 716 FunFam elongation factor 1-alpha isoform X4 606 715 - -
Vium4270g00012 716 FunFam Translation elongation factor EF-1 512 602 - -
Vium4270g00012 716 CDD HBS1_C_III 603 711 - -
Vium4270g00012 716 CDD EF1_alpha 289 508 - -
Vium4270g00012 716 Gene3D Translation factors 513 602 - -
Vium4270g00012 716 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 285 509 IPR000795 GO:0003924|GO:0005525
Vium4270g00012 716 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Vium4270g00012 716 Gene3D - 276 510 IPR027417 -
Vium4270g00012 716 PANTHER TRANSLATION FACTOR 283 711 - -
Vium4270g00012 716 MobiDBLite consensus disorder prediction 134 186 - -
Vium4270g00012 716 SMART zf_4 47 71 IPR001876 -
Vium4270g00012 716 FunFam Elongation factor 1 alpha-like protein 278 509 - -
Vium4270g00012 716 Pfam Elongation factor Tu GTP binding domain 288 503 IPR000795 GO:0003924|GO:0005525
Vium4270g00012 716 Pfam Elongation factor Tu domain 2 536 598 IPR004161 GO:0005525
Vium4270g00012 716 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Vium4270g00012 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 530 IPR027417 -
Vium4270g00012 716 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Vium4270g00012 716 MobiDBLite consensus disorder prediction 134 195 - -
Vium4270g00012 716 Pfam Elongation factor Tu C-terminal domain 604 711 IPR004160 -
Vium4270g00012 716 Gene3D Translation factors 606 715 - -
Vium4270g00012 716 PRINTS GTP-binding elongation factor signature 289 302 IPR000795 GO:0003924|GO:0005525
Vium4270g00012 716 PRINTS GTP-binding elongation factor signature 384 395 IPR000795 GO:0003924|GO:0005525
Vium4270g00012 716 PRINTS GTP-binding elongation factor signature 348 356 IPR000795 GO:0003924|GO:0005525
Vium4270g00012 716 PRINTS GTP-binding elongation factor signature 368 378 IPR000795 GO:0003924|GO:0005525
Vium4270g00012 716 PRINTS GTP-binding elongation factor signature 429 438 IPR000795 GO:0003924|GO:0005525
Vium4270g00012 716 SUPERFAMILY Translation proteins 508 602 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4270g00012 Vium-Chr4270 69494 77152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4270g00012 47 714 Eukaryotic Initiation Factors Gene Family AT5G10630 60.329 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4270g00012 K14416 - gmx:100798594 1196.03