Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4270g00011 | ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGACGACTATTACTACGATGATGATTATGACGACTATGATTACGATGATGTCGATGCAGATGGTCATGGAGGACCTGATACAAAGCAAGAGACCATCAAGCCAGGTCTTTGGCAATGCTCCATTTGCACTTATGACAATGACGAGAGTATGGCATTTTGTGATATATGTGGTGTTGTACGAAGACCCTCGCATAACATTGGAACTTCCGACAGTAGCAAAATAGACAATGTTACAAACAAAAAAAGTTCGAAACTTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAGACAACTTATCTTCCTTAACGCAAAAGAGCAGGAAGGATAGTTCAGCCCAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAACCTTCAAACAGCTTGTCAGAATCTCTGCCAAAAGGCAAAGGTGAAAATATTAATAAAATAAACTCTTTGAAAAGTGGTACAATTGATATTCAATTGAGCAAAGAGAAGTCTGGTAGTTTGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAGTTTCCATTCTATCAAAGATGGAAAAGCGGAAAGTATTTCCAGCAATTTCAACAACATGACTGCTGATGTAAGATCTGGAAATTCAGACAATGCTAATGCTAAGAAACCTCATTCACTTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTACGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACTGTTGCGGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAACAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTCATAGTTGCTGTAAATAAGATGGATGCTGTTGCATACACCCAGGATCGATTTGATTTTATAAGGCAGCATCTGGGAGCTTTTCTGCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCTATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATCCTCGTTTCAAAAACTGGTATAATGGACCTTATCTGTTAGATGCGATTGACTCTCTTCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTACGCTTGGACAGGTATCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCTAAGGTCTTAGTTATGCCTTCAGCTATAGTGGGAACGGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCCGTTGCAGCTGCTAGGAATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAGAAGTCGCCTCGATGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGCTTTGAACGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGCGTTGTAACAAGAATAATTGAGGACGAAGGTTAA | 2073 | 0.4178 | MPRKVSYGLDLDDDYYYDDDYDDYDYDDVDADGHGGPDTKQETIKPGLWQCSICTYDNDESMAFCDICGVVRRPSHNIGTSDSSKIDNVTNKKSSKLSSSIREINELSVQSNAESSDNLSSLTQKSRKDSSAQSKLSKNVATGLQASGKPSNSLSESLPKGKGENINKINSLKSGTIDIQLSKEKSGSLSALSKVKESDKNSFHSIKDGKAESISSNFNNMTADVRSGNSDNANAKKPHSLVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGNKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTQDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDPRFKNWYNGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTTLGQVSACGKLEAGALRSGSKVLVMPSAIVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAAARNLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVALNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG | 690 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4270g00011 | 690 | SUPERFAMILY | Translation proteins | 482 | 576 | IPR009000 | - | |
Vium4270g00011 | 690 | MobiDBLite | consensus disorder prediction | 108 | 160 | - | - | |
Vium4270g00011 | 690 | SUPERFAMILY | Ran binding protein zinc finger-like | 47 | 72 | IPR036443 | - | |
Vium4270g00011 | 690 | MobiDBLite | consensus disorder prediction | 78 | 97 | - | - | |
Vium4270g00011 | 690 | PRINTS | GTP-binding elongation factor signature | 263 | 276 | IPR000795 | GO:0003924|GO:0005525 | |
Vium4270g00011 | 690 | PRINTS | GTP-binding elongation factor signature | 403 | 412 | IPR000795 | GO:0003924|GO:0005525 | |
Vium4270g00011 | 690 | PRINTS | GTP-binding elongation factor signature | 322 | 330 | IPR000795 | GO:0003924|GO:0005525 | |
Vium4270g00011 | 690 | PRINTS | GTP-binding elongation factor signature | 358 | 369 | IPR000795 | GO:0003924|GO:0005525 | |
Vium4270g00011 | 690 | PRINTS | GTP-binding elongation factor signature | 342 | 352 | IPR000795 | GO:0003924|GO:0005525 | |
Vium4270g00011 | 690 | MobiDBLite | consensus disorder prediction | 108 | 169 | - | - | |
Vium4270g00011 | 690 | Gene3D | - | 41 | 79 | - | - | |
Vium4270g00011 | 690 | Pfam | Elongation factor Tu domain 2 | 510 | 572 | IPR004161 | GO:0005525 | |
Vium4270g00011 | 690 | CDD | EF1_alpha | 263 | 482 | - | - | |
Vium4270g00011 | 690 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 259 | 483 | IPR000795 | GO:0003924|GO:0005525 | |
Vium4270g00011 | 690 | CDD | HBS1_C_III | 577 | 685 | - | - | |
Vium4270g00011 | 690 | Gene3D | Translation factors | 580 | 689 | - | - | |
Vium4270g00011 | 690 | SMART | zf_4 | 47 | 71 | IPR001876 | - | |
Vium4270g00011 | 690 | FunFam | Translation elongation factor EF-1 | 486 | 576 | - | - | |
Vium4270g00011 | 690 | Pfam | Elongation factor Tu C-terminal domain | 578 | 685 | IPR004160 | - | |
Vium4270g00011 | 690 | Pfam | Elongation factor Tu GTP binding domain | 262 | 477 | IPR000795 | GO:0003924|GO:0005525 | |
Vium4270g00011 | 690 | FunFam | Elongation factor 1 alpha-like protein | 252 | 483 | - | - | |
Vium4270g00011 | 690 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 261 | 504 | IPR027417 | - | |
Vium4270g00011 | 690 | ProSitePatterns | Zinc finger RanBP2-type signature. | 49 | 68 | IPR001876 | - | |
Vium4270g00011 | 690 | FunFam | elongation factor 1-alpha isoform X4 | 580 | 689 | - | - | |
Vium4270g00011 | 690 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 582 | 686 | IPR009001 | - | |
Vium4270g00011 | 690 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 45 | 74 | IPR001876 | - | |
Vium4270g00011 | 690 | PANTHER | TRANSLATION FACTOR | 257 | 685 | - | - | |
Vium4270g00011 | 690 | Gene3D | Translation factors | 487 | 576 | - | - | |
Vium4270g00011 | 690 | Gene3D | - | 250 | 484 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4270g00011 | Vium-Chr4270 | 69494 | 77152 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4270g00011 | 47 | 688 | Eukaryotic Initiation Factors Gene Family | AT5G10630 | 60.592 | 0.0 | 781 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4270g00011 | K14416 | - | gmx:100798594 | 1137.09 |