Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4270g00011 ATGCCTCGCAAAGTCAGTTATGGACTCGATTTGGACGACGACTATTACTACGATGATGATTATGACGACTATGATTACGATGATGTCGATGCAGATGGTCATGGAGGACCTGATACAAAGCAAGAGACCATCAAGCCAGGTCTTTGGCAATGCTCCATTTGCACTTATGACAATGACGAGAGTATGGCATTTTGTGATATATGTGGTGTTGTACGAAGACCCTCGCATAACATTGGAACTTCCGACAGTAGCAAAATAGACAATGTTACAAACAAAAAAAGTTCGAAACTTTCATCAAGCATCAGAGAGATAAATGAACTCTCTGTTCAATCAAATGCTGAAAGTTCAGACAACTTATCTTCCTTAACGCAAAAGAGCAGGAAGGATAGTTCAGCCCAGAGCAAGCTTTCAAAAAATGTAGCAACTGGTCTGCAAGCAAGTGGTAAACCTTCAAACAGCTTGTCAGAATCTCTGCCAAAAGGCAAAGGTGAAAATATTAATAAAATAAACTCTTTGAAAAGTGGTACAATTGATATTCAATTGAGCAAAGAGAAGTCTGGTAGTTTGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAAGAATAGTTTCCATTCTATCAAAGATGGAAAAGCGGAAAGTATTTCCAGCAATTTCAACAACATGACTGCTGATGTAAGATCTGGAAATTCAGACAATGCTAATGCTAAGAAACCTCATTCACTTGTTTCTTATAAGCCAGAAAAATGGATGCTACCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACCCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAGATGCACAAGTACGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCTTTTGCTTATGCTTGGGCACTTGATGAAAGCTCTGAAGAAAGAGAAAGGGGAATAACTATGACTGTTGCGGTTGCTTATTTTGACACCAAGAAATATCATGTTGTTTTGCTCGACTCTCCTGGCCATAAAGATTTTGTCCCGAACATGATTTCTGGGGCAACACAAGCAGATGCTGCAATCCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAACAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGTTTTGGTGTTGATCGGGTCATAGTTGCTGTAAATAAGATGGATGCTGTTGCATACACCCAGGATCGATTTGATTTTATAAGGCAGCATCTGGGAGCTTTTCTGCACTCATGTGGTTTCAAAGATTCTTCTCTATCTTGGATTCCTATGAGTGCTATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATCCTCGTTTCAAAAACTGGTATAATGGACCTTATCTGTTAGATGCGATTGACTCTCTTCAAGCTCCTACTAGAGAATTTTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTACGCTTGGACAGGTATCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCTAAGGTCTTAGTTATGCCTTCAGCTATAGTGGGAACGGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAACATTGCAAGGTGTCGATGGAAATCAGGTGATGGCAGGAGATGTACTATGCCATCCTGACTTTCCCGTTGCAGCTGCTAGGAATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCAATATTGGTGGGCACACAGTTGGAGTTTCATATACACCATGCGAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAGAAGTCGCCTCGATGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGGCTTTGAACGAGTCTGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCCATGGGAAGAACAATTGCTGTTGGCGTTGTAACAAGAATAATTGAGGACGAAGGTTAA 2073 0.4178 MPRKVSYGLDLDDDYYYDDDYDDYDYDDVDADGHGGPDTKQETIKPGLWQCSICTYDNDESMAFCDICGVVRRPSHNIGTSDSSKIDNVTNKKSSKLSSSIREINELSVQSNAESSDNLSSLTQKSRKDSSAQSKLSKNVATGLQASGKPSNSLSESLPKGKGENINKINSLKSGTIDIQLSKEKSGSLSALSKVKESDKNSFHSIKDGKAESISSNFNNMTADVRSGNSDNANAKKPHSLVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGNKGQTREHAQLIRSFGVDRVIVAVNKMDAVAYTQDRFDFIRQHLGAFLHSCGFKDSSLSWIPMSAMENQNLVASPSDPRFKNWYNGPYLLDAIDSLQAPTREFSKPLLMPVCDVIKSTTLGQVSACGKLEAGALRSGSKVLVMPSAIVGTVRSLERDSNACTVARAGDNVAVTLQGVDGNQVMAGDVLCHPDFPVAAARNLELKVLVLDGASPILVGTQLEFHIHHAKEPARVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVALNESVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEDEG 690
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium4270g00011 690 SUPERFAMILY Translation proteins 482 576 IPR009000 -
Vium4270g00011 690 MobiDBLite consensus disorder prediction 108 160 - -
Vium4270g00011 690 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Vium4270g00011 690 MobiDBLite consensus disorder prediction 78 97 - -
Vium4270g00011 690 PRINTS GTP-binding elongation factor signature 263 276 IPR000795 GO:0003924|GO:0005525
Vium4270g00011 690 PRINTS GTP-binding elongation factor signature 403 412 IPR000795 GO:0003924|GO:0005525
Vium4270g00011 690 PRINTS GTP-binding elongation factor signature 322 330 IPR000795 GO:0003924|GO:0005525
Vium4270g00011 690 PRINTS GTP-binding elongation factor signature 358 369 IPR000795 GO:0003924|GO:0005525
Vium4270g00011 690 PRINTS GTP-binding elongation factor signature 342 352 IPR000795 GO:0003924|GO:0005525
Vium4270g00011 690 MobiDBLite consensus disorder prediction 108 169 - -
Vium4270g00011 690 Gene3D - 41 79 - -
Vium4270g00011 690 Pfam Elongation factor Tu domain 2 510 572 IPR004161 GO:0005525
Vium4270g00011 690 CDD EF1_alpha 263 482 - -
Vium4270g00011 690 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 259 483 IPR000795 GO:0003924|GO:0005525
Vium4270g00011 690 CDD HBS1_C_III 577 685 - -
Vium4270g00011 690 Gene3D Translation factors 580 689 - -
Vium4270g00011 690 SMART zf_4 47 71 IPR001876 -
Vium4270g00011 690 FunFam Translation elongation factor EF-1 486 576 - -
Vium4270g00011 690 Pfam Elongation factor Tu C-terminal domain 578 685 IPR004160 -
Vium4270g00011 690 Pfam Elongation factor Tu GTP binding domain 262 477 IPR000795 GO:0003924|GO:0005525
Vium4270g00011 690 FunFam Elongation factor 1 alpha-like protein 252 483 - -
Vium4270g00011 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 504 IPR027417 -
Vium4270g00011 690 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Vium4270g00011 690 FunFam elongation factor 1-alpha isoform X4 580 689 - -
Vium4270g00011 690 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 582 686 IPR009001 -
Vium4270g00011 690 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Vium4270g00011 690 PANTHER TRANSLATION FACTOR 257 685 - -
Vium4270g00011 690 Gene3D Translation factors 487 576 - -
Vium4270g00011 690 Gene3D - 250 484 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium4270g00011 Vium-Chr4270 69494 77152 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4270g00011 47 688 Eukaryotic Initiation Factors Gene Family AT5G10630 60.592 0.0 781
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4270g00011 K14416 - gmx:100798594 1137.09