Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4267g00011 ATGGGTAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGACCACCCGAGAAGCCGGTACTATGCAATGCATGTGGGTCTCGGTGGAGGACCAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAACAGAAACTGATGCTTGTGGGGATCAAAGGGTTTCCAGGATAAAGAGCATATCAAATAAGAAGAGAGAAATGACATTGCTCAAGCCAAATAATGACCATGATAATGAACTATCTGGAGAGTTTGCACCTGATTACAACCAGGGATGTCAAATCTTTGCAGATGAAGATGCAAGCAACCGATCAAGTTCCGGATCAGCTATTTCTAACTCAGAGAGCTGTGCACAATATGGTGCCATGGATGCTTGTGATCTGACAGGTCCTGTTCAGTCAGTGGTTTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGCGTTGGCCGGCCAAAGGCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGTACCATTCTTCATGAACAACAGTCTTATTTCTCTGCATCTTCTCAAGAAGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTATATAGTCCGTGATGAAGAGTCCGAGGCTAGTTCTCTTTCAGTTGATAATAAACAATGCCCAACGAGTGAGGCATATTCTTATGTTGGTCCCATTATGATGCATAATGATTCTAGTTACTTGAAGCCATCATCTCTAGAAGTTGAAAAGATCAGGAACTATACTGACCAAGGATGGCAGCCGGAACAACATAAAAGTGATAAGTCTCAACTTGAAAGAGTACAGATCCTTGGCAATCATGAATCACCCCTGTGCTCTATAGATTTAAATGATATAGTAAACTATGAAGAGTTTTTGAGAATCTTGACAAATGAAGAGCAACAACAGTTACTGAAGTTACTTCCTGGGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAGTCATGTTCAATAGTTCTCAATTCAAGGAGAACATAACTTGTTTTCAGCAGCTTCTTGCGGAAGGGGTTTTTGATATCTCTTTGTTGGGGGCAAAACCTGAAGATTGCAAGACTTTGAAAAGACTAGCAATATCCAATCTGTCGAAGTCAAAATGGGTTGAACACTATAATTTTCTCAAGAAATGTAAAAAAAAAGGTGGAAAATTTGATTCTTTTGGATCTGCTGTTACAGCAACAACTAATGCTGCAAACAAGAGAACGCGTGACAGCAGAAATCAAAACTTCCCAGAATTGAATACAGAAATGAGGAGCCCAAAAAGAATGATCACAAAGGTTAGCTGTGAGGTGAAAGAGGGTGTAGAAGATGGTGCTTGCTATAGTCCAAAAAGCCTATTTGCTTTGCCTACTGATGCTAGTTCACTCATGCTTGGTTCTTTGAACTTTGTGGAGGAGATCAGTGAGCAGGATCTGCTGCTAGAGGTGCCATCTAACACTTCTTTTCCTCAGGCAGAGCTCTTGCACCCAAGTGCTAGTAGCAGCTCAGTCTACTCACATCTTATTCATCATTAA 1593 0.4137 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDACGDQRVSRIKSISNKKREMTLLKPNNDHDNELSGEFAPDYNQGCQIFADEDASNRSSSGSAISNSESCAQYGAMDACDLTGPVQSVVWDAMVPSKKRTCVGRPKASSVEKLTKDLCTILHEQQSYFSASSQEDLLFESETPMVSVEIGHGSILIRHPSYIVRDEESEASSLSVDNKQCPTSEAYSYVGPIMMHNDSSYLKPSSLEVEKIRNYTDQGWQPEQHKSDKSQLERVQILGNHESPLCSIDLNDIVNYEEFLRILTNEEQQQLLKLLPGVDTAKLPDSLKVMFNSSQFKENITCFQQLLAEGVFDISLLGAKPEDCKTLKRLAISNLSKSKWVEHYNFLKKCKKKGGKFDSFGSAVTATTNAANKRTRDSRNQNFPELNTEMRSPKRMITKVSCEVKEGVEDGACYSPKSLFALPTDASSLMLGSLNFVEEISEQDLLLEVPSNTSFPQAELLHPSASSSSVYSHLIHH 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4267g00011 530 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Vium4267g00011 530 PANTHER OSJNBB0038F03.10 PROTEIN 1 520 IPR044589 -
Vium4267g00011 530 Gene3D - 3 77 IPR013088 GO:0006355|GO:0008270
Vium4267g00011 530 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Vium4267g00011 530 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Vium4267g00011 530 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Vium4267g00011 530 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Vium4267g00011 530 Gene3D - 285 391 IPR038108 -
Vium4267g00011 530 Pfam Asx homology domain 278 381 IPR028020 -
Vium4267g00011 530 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Vium4267g00011 530 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4267g00011 Vium-Chr4267 60545 66104 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4267g00011 1 515 C2C2-Gata Transcription Factor Family AT4G17570 50.936 4.68e-151 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium4267g00011 ASXH 9.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4267g00011 - - gmx:100798504 808.52