Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4267g00010 ATGAGTGTGGACCTACTTTCAAGGGGATGGGGTGTGAGATCCCTGAGTTCAATCCCTTCAGGAAGTTATATCTGTGAATATATAGGGGAGCTTCTTGAAGAAAAGGAAGCTGAACTAAGGGCAGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTGCAGCAACAGTACTCTCTGGGATGGACTTACGACTCTCATGCCGGATGCACAGACAAGTTCCTGCGATGTTGTGAAGGATGGTGGTTTTACTATTGATGCTGCTGAGTTTGGCAATATAGGGAGATTCATTAACCATAGTTGCTCACCTAATATAATTGCTCAGAACGTCCTTTATGATCATCATGACACCAGAATGCCTCACATAATGTTCTTTGCTGCTGATAACATTCCTCCTTTGCAAGAGCTGACCTACGATTACAACTACGAACTAGATCAAGTCCGCGATTCTGATGGTAATATAAAAAGGAAGTATTGTTACTGCGGTTCTGCTGAATGTACTGGCAGAATGTATTGA 516 0.4167 MSVDLLSRGWGVRSLSSIPSGSYICEYIGELLEEKEAELRAGNDEYLFDIGNNCSNSTLWDGLTTLMPDAQTSSCDVVKDGGFTIDAAEFGNIGRFINHSCSPNIIAQNVLYDHHDTRMPHIMFFAADNIPPLQELTYDYNYELDQVRDSDGNIKRKYCYCGSAECTGRMY 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4267g00010 171 SMART set_7 1 147 IPR001214 GO:0005515
Vium4267g00010 171 ProSiteProfiles SET domain profile. 1 141 IPR001214 GO:0005515
Vium4267g00010 171 Pfam SET domain 9 141 IPR001214 GO:0005515
Vium4267g00010 171 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 7 165 - -
Vium4267g00010 171 ProSiteProfiles Post-SET domain profile. 155 171 IPR003616 -
Vium4267g00010 171 SUPERFAMILY SET domain 8 168 IPR046341 -
Vium4267g00010 171 Gene3D SET domain 3 171 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4267g00010 Vium-Chr4267 48663 49255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4267g00010 7 171 EF-hand Containing Proteins AT5G13960 41.618 1.29e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium4267g00010 SET 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4267g00010 K11420 - vum:124837332 350.132