Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4267g00008 ATGGAACTCAATTTTAAGCACCAACTTGGCCTTCTCTGTCTCACACTGCTCTTACCTGCTCTGTGTTCCTCTCAGGACTCTTTTACTTGCTCAAGAGCAACCTATTATGGTAGCCCAGATTGTTATGGAAATCCAAGGGGAGCTTGTGGCTTTGGCGAATATGGAAAAACAGTAAACGATGGAAGTGTTGCAGGCGTGTCCTGGCTATGGAAGAATGGATCTGGCTGTGGGGCATGTTATCAGGTTAGGTGTAAAATAGCAGAATTGTGCGATGAGAATGGAGCATACGTGGTGGTGACAGATTATGGTGAGGGAGACAGAACAGACTTTATAATGAGTGCACGTGGCTACTCAAAATTGGGGAGAAACACGTATGCAGCTGCAGAGCTATTGAAATACGGTGTAGTGGACGTAGAATACAGAAGGGTCCCCTGTAGATACGGTGGCTACAACCTCTTGGTTAAGGTCCACGAACACAGCAGAAACCCTCACTACCTGGCCATTCTCATTCTCTATATCGGTGGAACTTACGACGTCACTGCTGTTGAGTTGTGGCAGGAAGAGTGCCAAGAGTGGAGGCGAATGCGCAGAGCATTTGGGACAGTGTTTGATGCTGAGAACCCGCCAAGGGGTGACATAAAGTTGAGGTTCCAATTGAGTGGTAATGCAGAGCAGTATTGGGTGCAATCCAAGAATGTTATTTCTGGTGATTGGGAGGCTGGAGCTGTTTATGACTCAGAAATTCACCTTGGATAA 756 0.4683 MELNFKHQLGLLCLTLLLPALCSSQDSFTCSRATYYGSPDCYGNPRGACGFGEYGKTVNDGSVAGVSWLWKNGSGCGACYQVRCKIAELCDENGAYVVVTDYGEGDRTDFIMSARGYSKLGRNTYAAAELLKYGVVDVEYRRVPCRYGGYNLLVKVHEHSRNPHYLAILILYIGGTYDVTAVELWQEECQEWRRMRRAFGTVFDAENPPRGDIKLRFQLSGNAEQYWVQSKNVISGDWEAGAVYDSEIHLG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4267g00008 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Vium4267g00008 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Vium4267g00008 251 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
Vium4267g00008 251 CDD DPBB_EXLB_N 31 145 - -
Vium4267g00008 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vium4267g00008 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Vium4267g00008 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Vium4267g00008 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Vium4267g00008 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Vium4267g00008 251 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Vium4267g00008 251 Gene3D - 19 145 IPR036908 -
Vium4267g00008 251 PANTHER EXPANSIN-B3 17 248 - -
Vium4267g00008 251 Pfam Expansin C-terminal domain 154 234 IPR007117 -
Vium4267g00008 251 Gene3D - 146 247 IPR036749 -
Vium4267g00008 251 Pfam Lytic transglycolase 63 140 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4267g00008 Vium-Chr4267 45902 47779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4267g00008 5 250 Expansin Gene Family AT4G17030 60.159 5.98e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4267g00008 - - gmx:100802855 482.641