Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4267g00005 ATGGATCCATGGAACCTTTCATCTTCCAAGTTTCTCTCTAAACAACTTCCTTACCCTTCTCATCTCTACGCAGAAGAGATTCCCAACATGGGAAATTCCAGTGGTTTGATCAAGGATCTCAGAGGTTCGCAGTTGACAATCTTCTATGATGGTCAAGTTGTTGTCTTTGATGATATTCAAGCTGACAAAGCCAAGGATATCATATCTTTTGCCAACACAGGAATGTCCCAAAACCAGAACGGCTATGCTTGCTCGTACCCTGCTGCAATTTCTGCTACTTCCAGCAGACCGTTTCCTTTTCTTATGAATATCATCCCTACCACTGCCAACAATTCGGTTCAGGAGCACCCTCAAACACCGTCTAAATCTGTTATATGCGATCTACCTTTGGCTAGAAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGAAGCCCTTAGTAAGCCAGGTGAATCCACGCCATGGCTCACCTTGGCATCTAAATCGCTACAAGACGAATCTGATTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAA 585 0.4325 MDPWNLSSSKFLSKQLPYPSHLYAEEIPNMGNSSGLIKDLRGSQLTIFYDGQVVVFDDIQADKAKDIISFANTGMSQNQNGYACSYPAAISATSSRPFPFLMNIIPTTANNSVQEHPQTPSKSVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMEALSKPGESTPWLTLASKSLQDESDSDSSSSFVLF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4267g00005 194 SMART tify_2 38 73 IPR010399 -
Vium4267g00005 194 Pfam Jas motif 129 154 IPR018467 -
Vium4267g00005 194 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 40 164 IPR040390 -
Vium4267g00005 194 MobiDBLite consensus disorder prediction 173 194 - -
Vium4267g00005 194 ProSiteProfiles Tify domain profile. 38 73 IPR010399 -
Vium4267g00005 194 Pfam tify domain 43 72 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4267g00005 Vium-Chr4267 20601 22223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4267g00005 22 177 Tify Gene Family AT1G19180 35.849 5.00e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium4267g00005 tify 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4267g00005 K13464 - gmx:100306332 272.707