Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4267g00003 ATGGAAGAAGAACGATACGAGACTCTGAAGGAGCTTGGTTCGGGGAACTTTGGAGTGGCAAGGTTGGCCAAAGACAAGAAGACAGGGGAACTTGTTGCTATCAAATACATAGAAAGAGGAAAAAAGATTGATGCGAATGTCCAAAGGGAGATAGTAAACCACCGATCTCTAAGGCATCCGAATATTATTAGGTTCAAAGAGGTATTTCTGACCCATACTCATTTAGCTATTGTCTTGGAGTATGCTGCTGGAGGTGAACTCTTCGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAGGCAAGATTTTTCTTCCAGCAACTGATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAATTGGAAAACACTCTACTTGACGGAAATCCAGCTCCTAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTGCTGCACTCTCAGCCTAAGTCAACGGTTGGAACTCCTGCATACATTGCTCCAGAAGTTTTGTCACGAAAGGAATATGATGGAAAGATTGCAGATGTTTGGTCGTGTGGTGTGACTCTTTATGTGATGTTAGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAAGAATTTCAGAAAGAGTATTGGGAGAATTATGAGTGTTCAATACGCCATACCCGACTATGTTCGTGTTTCTAAGGAGTGCAGACATCTTATCTCTTCTATTTTTGTTGCTAATCCTGCCAAGAGGATCACCATGTCGGAGATAAAACAACACCTTTGGTTTAGGAAGAACTTGCCGAGGGAGATAATCGAGGCTGAAAGAAGGGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAGAGTGTGGAAGAAATAATGCAGATCATAGAAGAAGCAAGGACAAAAATTCACACTCTTGAGCAAACTTCGACAGGATCGTCGAACGTTGTACATGTTGATGAGGCTAACGAGGAAGTTGAAGACCACTTTGCCAAAAATCTAGTCCTTGAGTAA 1017 0.4189 MEEERYETLKELGSGNFGVARLAKDKKTGELVAIKYIERGKKIDANVQREIVNHRSLRHPNIIRFKEVFLTHTHLAIVLEYAAGGELFERICNAGRLSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKSIGRIMSVQYAIPDYVRVSKECRHLISSIFVANPAKRITMSEIKQHLWFRKNLPREIIEAERRGYEETQKDQPSQSVEEIMQIIEEARTKIHTLEQTSTGSSNVVHVDEANEEVEDHFAKNLVLE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4267g00003 338 FunFam Serine/threonine-protein kinase SRK2E 82 270 - -
Vium4267g00003 338 CDD STKc_SnRK2 5 261 - -
Vium4267g00003 338 Coils Coil 320 338 - -
Vium4267g00003 338 SUPERFAMILY Protein kinase-like (PK-like) 4 287 IPR011009 -
Vium4267g00003 338 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4267g00003 338 Coils Coil 290 310 - -
Vium4267g00003 338 Gene3D Transferase(Phosphotransferase) domain 1 82 270 - -
Vium4267g00003 338 PANTHER SERINE/THREONINE KINASE 4 300 - -
Vium4267g00003 338 SMART serkin_6 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4267g00003 338 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Vium4267g00003 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vium4267g00003 338 ProSiteProfiles Protein kinase domain profile. 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4267g00003 338 FunFam Serine/threonine-protein kinase SRK2E 1 81 - -
Vium4267g00003 338 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4267g00003 Vium-Chr4267 9674 13200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4267g00003 5 274 CBL-interacting serine-threonine protein kinases AT4G24400 43.416 9.61e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vium4267g00003 Pkinase 9.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4267g00003 K14498 - gmx:547797 633.254