Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4265g00033 ATGAGCGAGAGTGAGAAGCAGAGGGTAACGGGAAAGGTCAAGTGGTTCAATGATCAGAAGGGATTTGGCTTCATAACCACCGATGACGGCGGCGAGGATCTCTTCGTCCACCAGTCCTCCATCCGATCCGACGGTTTTCGCAGCCTCGCCCTAGGAGAGTCCGTCGAGTTCCTCATCGACTCCGATTCCGAAGGCCGCACCAAGGCCGTCGACGTCACCGGCCCTGACGAATCGCCCGTGCAGGGCACCCGCGGTGGTGGAGGAGGGGGAAGAGGTGGATACGGCGGCGGCGGTGGTGGTGGAAGAGGTGGCTATGGCGGCGGAGGACGCGGAGGACGAGGTGGATATGGAGGCGGTGGCGGATATGGAGGAGGTGGATATGGCGGAGGCGGTGGGTATGGTGGAGGTGGTGGTGGTGGAGGGGGTTGCTATAAGTGTGGGGAGACAGGTCACATGGCGAGGGACTGCAGCCAAGGTGGAGGCGGCGGTGGAAGGTACGGCGGAGGTGGTGGCGGCGGTGGCGGTGGAAGCTGCTACAACTGTGGGGAGTCTGGGCATTTTGCGAGGGACTGCACTTCGAATGCGCGTTGA 591 0.6277 MSESEKQRVTGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLALGESVEFLIDSDSEGRTKAVDVTGPDESPVQGTRGGGGGGRGGYGGGGGGGRGGYGGGGRGGRGGYGGGGGYGGGGYGGGGGYGGGGGGGGGCYKCGETGHMARDCSQGGGGGGRYGGGGGGGGGGSCYNCGESGHFARDCTSNAR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4265g00033 196 SMART c2hcfinal6 142 158 IPR001878 GO:0003676|GO:0008270
Vium4265g00033 196 SMART c2hcfinal6 177 193 IPR001878 GO:0003676|GO:0008270
Vium4265g00033 196 Gene3D - 1 85 IPR012340 -
Vium4265g00033 196 ProSiteProfiles Zinc finger CCHC-type profile. 143 158 IPR001878 GO:0003676|GO:0008270
Vium4265g00033 196 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Vium4265g00033 196 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Vium4265g00033 196 ProSiteProfiles Zinc finger CCHC-type profile. 178 193 IPR001878 GO:0003676|GO:0008270
Vium4265g00033 196 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Vium4265g00033 196 PANTHER COLD SHOCK DOMAIN PROTEIN 2 112 194 - -
Vium4265g00033 196 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Vium4265g00033 196 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Vium4265g00033 196 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Vium4265g00033 196 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Vium4265g00033 196 MobiDBLite consensus disorder prediction 65 95 - -
Vium4265g00033 196 SUPERFAMILY Retrovirus zinc finger-like domains 135 194 IPR036875 GO:0003676|GO:0008270
Vium4265g00033 196 Pfam Zinc knuckle 142 158 IPR001878 GO:0003676|GO:0008270
Vium4265g00033 196 Pfam Zinc knuckle 177 193 IPR001878 GO:0003676|GO:0008270
Vium4265g00033 196 Gene3D - 139 165 - -
Vium4265g00033 196 Gene3D - 173 196 - -
Vium4265g00033 196 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Vium4265g00033 196 SMART csp_8 10 75 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4265g00033 Vium-Chr4265 195933 196762 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vium4265g00033 CSD 2e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4265g00033 - - gmx:100820359 214.927