Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4265g00030 ATGGATGCTCATGGACAATGGCTGTTGGAGTTTCTTCTTCGGAGCCCAGACACAGAGAATAAAGATAACCTAATAAAAGATGTGCTTCGAATGATCTCTGTTTCTGATCTTGATTTCCGTATCAAGAAGATCTTTCTTCTCAAAACTCTTCAAAACGACTTCTCTTCTCATTCTATCACCGAAACCCTTCTCAAAACCCTCGAGCTCCTTGAGGAAGTCTTTCGCTGCGATGCCTCTCCGGTCACTGCCACCATGAGTGCCGCCTACTGCGCCGTGGCGGTGGAATGCACAATCAAGTATCTGCAAGTGAATCTTTACAACCACAATGCCCCCTACCTCCGAGCCGTGAACAGGATATGGCAACTTAGGATTCCGCAGATGATCGGTTCCGGTTCCAGAGAGGGGAGCCTTCTGTTCTCAGTGGAGTTGGAGCAGTGGAGAAAGGACATTGAAACTTCACTTTTGGATTTACAAGTGAGGGAGCGGTTGGCCTCCATAGATACCAGAAGGGATGCCATCATAAAGTTCAGGGCCTTTTTGGAGGAAGCCTGGACCGTTATGGACTCTTCTTTTGTTCCGTTAGCAGCTACTGAACACAAACTAAACCAAGAAGGAGAAGTTCAGAAGTGTAGCATTGTTGCAGCTGAGAATTTGCATTTACCAAAAACTATTGAAGTTGAAAAGATTGGGGATTGCATTTCTGAGGAGCTGTTGGCTAAGGATTCTTTAGCAAAAATTGTTGAAGTTGAAAAGGTTAGGGATTGTATTTCTGGGGAGTTGCAAGACATGGCTAAGAATTCTTTACCAACAACGGTTGAAGTTGAAAAGGTTGGGGATTGCATTTCTGGGGAGGTGCAAGCCTTGGCTAAGGATACTTTAACAACAACTATGGAAGATAATGAGGATGCAAGGCAGACTGTAGAGGCAGATGTATCTTGTCCACAAGATATAAATGATAATGAGGCTGATCCTGTGGAAAAGGGTCAAGCTTCTATCCCCAGTAATTGTGAACAAAGGCCTAATTTGATGGAAAAGAATAGTACGGCACGTGTTGATGAGTGGGATTCTATAGATGGTCTGGAGGGTGTAAGTAGATTCAATTTGCCTAGTCCCAAGAGGAGAAAACTTCCTCCATTAGAGACTTATAAACCAACCGACATTACAAAGAGGAGAAAAGCAAAAAGGTGGAGTCAGTTAGAAGAGGAGACACTTAAGAATGGCGTAGAGAAGTTTGGCAAGGGAAATTGGAAGTTAATCCTAAATGCTCACCAAGATATATTTGAGGAGAGAACGGAAGTTGATTTGAAGGACAAATGGAGGAATATGACGCGGTATGGGTTTGCAAATAAATCGTAA 1356 0.4344 MDAHGQWLLEFLLRSPDTENKDNLIKDVLRMISVSDLDFRIKKIFLLKTLQNDFSSHSITETLLKTLELLEEVFRCDASPVTATMSAAYCAVAVECTIKYLQVNLYNHNAPYLRAVNRIWQLRIPQMIGSGSREGSLLFSVELEQWRKDIETSLLDLQVRERLASIDTRRDAIIKFRAFLEEAWTVMDSSFVPLAATEHKLNQEGEVQKCSIVAAENLHLPKTIEVEKIGDCISEELLAKDSLAKIVEVEKVRDCISGELQDMAKNSLPTTVEVEKVGDCISGEVQALAKDTLTTTMEDNEDARQTVEADVSCPQDINDNEADPVEKGQASIPSNCEQRPNLMEKNSTARVDEWDSIDGLEGVSRFNLPSPKRRKLPPLETYKPTDITKRRKAKRWSQLEEETLKNGVEKFGKGNWKLILNAHQDIFEERTEVDLKDKWRNMTRYGFANKS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4265g00030 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 388 447 IPR017930 -
Vium4265g00030 451 CDD SANT_TRF 394 444 - -
Vium4265g00030 451 SMART sant 392 445 IPR001005 -
Vium4265g00030 451 Pfam Myb-like DNA-binding domain 394 442 IPR001005 -
Vium4265g00030 451 PANTHER MYB TRANSCRIPTION FACTOR 3 445 - -
Vium4265g00030 451 Gene3D - 396 451 - -
Vium4265g00030 451 SUPERFAMILY Homeodomain-like 395 448 IPR009057 -
Vium4265g00030 451 ProSiteProfiles Myb-like domain profile. 388 443 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4265g00030 Vium-Chr4265 164003 166177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4265g00030 1 442 Single Myb Histone (SMH) Gene Family AT1G15720 24.283 1.85e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium4265g00030 Myb_DNA-binding 2.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4265g00030 - K11111 var:108331610 854.358