Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4265g00014 ATGAAGAAAAGCAATCTCCGAAGCGCCAAAGTCCAATCGCCAAACCACGTTCAATTAAGTTCCAAGACGCCGGAGAAAATGTCGCAACGGAACCGCAACCGCGGCGTCGCACTCTCCGTCACAGACATAAAAAAAGTTGGCAAGGGTTTGCAGGATCGGAAGGGACGCGGTGAAACGACGTCGGCACGGCCGCAAAGCAAGAATGTGAGGAGGCAGATCTTACAGCGGTCTTCTTCTCCGAGTAAATCCAAGAGTACTGACGATGATCCCTCCAAGCTTCCCGAAAAATATGAAATTTTGGATCAGTTCTTCGATCGCTTGGACACTTTAATTTCAATGTTCCGTCTGAAAGGGAAAACGCCATCTTTTACGGAAATCAGTTCTAGAATTGAATCTTTAACAGACAGGAGGTTTACTCACGGCCATCTAGCGCAGTTGAAATTTATCTTGCCTGATGCTATTGTTCTGAAGAAGTTTCTAGTGCATGATGAACGGACCTGTTGCATGAAGCCGGATATTCACATTTCTTTAGCCCCTGAGGCTGTAGAGTCTGATTCGAAGATGCCCCCTGATCAACGTGGGATAGTGTCGTTGAAGAAGTTGTTTCACGCACGGCTTAGAGAATTTTGGGACTCTCATCCTGAGGGTGATGAAATTCCAGAAGCAACTTTGCCAGAGCCATTCAATGGCCCAAAGAAAGTCAATATTTTAGACAAGTTGGAAACTCGTCTCCCAACAAAATTATCACTCTGCATGCGCTATAATGACATTCTCAATAATGTAGAGTCTGCTAGCATAGATGAAAAGATGTCTACCCCTGTAGAGACATCAATTGAATTGCCTAATGAGCATCTGGCAGCAGCTTCTCACATTGCTCCATCCTTTAGAGCAAGTTTTTCTTTGAAATTTAAACAAGATTTAGCAGATACTGTACAGCAAATTTCTCAAGTAGATTCAGTACAACCCTCCCCTGCTAAGTCGGCTTCACAAGCAAGCAGTGAAAATTGTTCAACAATATGTTCCTCTCTGGAATCATCCAGTGCTCCCGCTCCCACCTCCACTCCAAGGAAAACCGTCGACTACACAGAAAACGAAGATGCTTCTCCCAAGAGGATTGATGCCATGTCAACTCCAGCTAAACTTGTTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGTTCACCCAAAAGATATCTTATGAGCCCAGATGACCACCCAACCAGTTCTTCGAACAAGTTAGCTAGGCGGCCACCTCGCTCAAGATCATTGAGATTTGACACCCCAGTGAAGAATGATGAGGTTGTGAATGAAGGCAGTGCCGGTGGATTACCAATAGATGATGATATTTTTGAGATCCTCCCAGGAAAACTTATCCAATCGATTAGAGAAAAGGAAAGAATGGCAATGGAGGAAAGAGACCCAGCTATCACTCAAGCAAAGAAACGGAAAAAAATTATAGCTAACCTCCCTAAGCTCTTTGACATGATTCGCCTCTTGCTTCGACAGCGGAATTGTATTACTAAAATGGAGCTTGTAAGCAAGATAATCTCAAGCCACAGTGATATTGTTGACATAAGTGAAATTGAAGAGCAGCTAGATTTGTTGCAAGAACTAGCACCGGAATGGATTTCTGAGAAGCAGGTCTCTAGTGGGGATTTGCTCTTATTCATAAACAAAATGTTGAACCCTGAAACCATTCGAGCATCTCTTGAAGAAGCGGCATAG 1734 0.44 MKKSNLRSAKVQSPNHVQLSSKTPEKMSQRNRNRGVALSVTDIKKVGKGLQDRKGRGETTSARPQSKNVRRQILQRSSSPSKSKSTDDDPSKLPEKYEILDQFFDRLDTLISMFRLKGKTPSFTEISSRIESLTDRRFTHGHLAQLKFILPDAIVLKKFLVHDERTCCMKPDIHISLAPEAVESDSKMPPDQRGIVSLKKLFHARLREFWDSHPEGDEIPEATLPEPFNGPKKVNILDKLETRLPTKLSLCMRYNDILNNVESASIDEKMSTPVETSIELPNEHLAAASHIAPSFRASFSLKFKQDLADTVQQISQVDSVQPSPAKSASQASSENCSTICSSLESSSAPAPTSTPRKTVDYTENEDASPKRIDAMSTPAKLVSTPIRLMSATPALRSPKRYLMSPDDHPTSSSNKLARRPPRSRSLRFDTPVKNDEVVNEGSAGGLPIDDDIFEILPGKLIQSIREKERMAMEERDPAITQAKKRKKIIANLPKLFDMIRLLLRQRNCITKMELVSKIISSHSDIVDISEIEEQLDLLQELAPEWISEKQVSSGDLLLFINKMLNPETIRASLEEAA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4265g00014 577 Pfam DNA replication factor CDT1 like 93 159 IPR014939 -
Vium4265g00014 577 MobiDBLite consensus disorder prediction 393 430 - -
Vium4265g00014 577 SMART CDT1_2 93 226 IPR014939 -
Vium4265g00014 577 SUPERFAMILY "Winged helix" DNA-binding domain 88 228 IPR036390 -
Vium4265g00014 577 MobiDBLite consensus disorder prediction 1 93 - -
Vium4265g00014 577 MobiDBLite consensus disorder prediction 341 358 - -
Vium4265g00014 577 CDD Cdt1_m 92 229 IPR014939 -
Vium4265g00014 577 MobiDBLite consensus disorder prediction 46 60 - -
Vium4265g00014 577 MobiDBLite consensus disorder prediction 7 36 - -
Vium4265g00014 577 FunFam CDT1-like protein a chloroplastic 449 577 - -
Vium4265g00014 577 PANTHER DNA REPLICATION FACTOR CDT1 9 576 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vium4265g00014 577 MobiDBLite consensus disorder prediction 61 81 - -
Vium4265g00014 577 Pfam DNA replication factor Cdt1 C-terminal domain 460 551 IPR032054 -
Vium4265g00014 577 MobiDBLite consensus disorder prediction 341 379 - -
Vium4265g00014 577 Gene3D - 450 577 IPR038090 -
Vium4265g00014 577 CDD Cdt1_c 450 574 IPR032054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4265g00014 Vium-Chr4265 86747 90168 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4265g00014 9 575 Core DNA Replication Machinery Family AT2G31270 38.095 4.19e-94 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4265g00014 K10727 - gmx:100778818 686.026