Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4265g00013 ATGGGTTTCGGCTTCCGTGGGTTTCAAAGGCGTGTGAACATCCCAAAGGGCAGTGTAGCAGTGTATGTAGGAGAAAACCAGAAGAAGCGTTTTGTGGTTCCCATATCATACTTGAACCAACCTTCTTTCCAAGAGTTGCTGAGTCAAGCTGAACAAGAATTTGGATTTGATCATCCAATGGGTGGCCTCACACTTCCTTGCAGAGAAGATGTCTTCCTTCAAGTCACTTCTCGCTTGCACAGGCGATAG 249 0.4659 MGFGFRGFQRRVNIPKGSVAVYVGENQKKRFVVPISYLNQPSFQELLSQAEQEFGFDHPMGGLTLPCREDVFLQVTSRLHRR 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4265g00013 82 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 79 IPR003676 GO:0009733
Vium4265g00013 82 Pfam Auxin responsive protein 13 78 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4265g00013 Vium-Chr4265 84105 84631 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4265g00013 13 72 Calmodulin-binding Proteins AT5G20810 50.000 1.37e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4265g00013 K14488 - gmx:106798359 146.747