Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4265g00012 ATGAAGAAACGCAATCTCCAAAGCTCCAAGGTCCAATCGCCAAACCCCGTTCAGTTCAGCTCCAAGACGCCGGAGAAACTGTCGCAACGGAACCGCACCTGCGGCGTCGCGCTCTCCGTCGCAGATATAAAAGAAGTAGGCAAGGGTTTGCAGAATCGGAAGCGACATTGTGAAACGACGTCGTCACCGCCGCCAAGCAAGAGTGTGAGGAGGCAGATCTTACAGTGGTCTTCTCCGAGTAAATCCAAGAGTACTAACGATGATCCCTACAAGCTTCCCGAAAAATATGAAATTTTGGATCAGTTCTTTGATCGCTTGGACACTTTAATTTCAATGTTTCGTCTGAAAGGGAAGACGCCGTCTTTTATGGAAATCAGTCATAGAATTGAATCTTTAACAGACAGGTACCGATCGATTAGGTTTACTCACGGCCATCTAGCGCAGTTGAAATTTATATTGCCTGATGCTATTGTTCTGAAGAAGTTTCTAGTGCATGATGAACGGACCAGTTGTATGAAGCAGGATATTCACATTTCTTTAGCTCCTGAGGCGGTAGAGTCTGATGTGAAGATGCCTCCTCAACGTGGGAGAGTGTCATTGAGGAAGTTGTTTTACGCACGACTTAGAGAATTTTGGGAATCTCATCCTGAGGGTGATGAAATTCCAGAAGGAACTTTACCGGAGCCATTCAATCGCCCAAAGAATGTCAATATTTTAGACACGTCGGAAACTCGTCTCCCAACAAAATTATCACTCTGCATGCGCTATAATGACATTGTCAATAATGTAGAGTCTGCTAGCATAGATGCAAATATGTCTGCACCTGTAGAGACATCAATTGAATTGCCTAATGAGCGTCTGGCAGCAGCTTCTCACATTGCCCCATTCTTTAGAGCAAGATTTTCTTTGAAACTTCAACAAAATTTAGCAGATACTGTACAGCAAATTTCTCAAGTAGATTCAGTACAACCCTCCCCAGCTGAGTGGGCTTCACAAGCAGCTAGCAGTGAAAATTATTCAAGAATATGTGCCTCTCTGGAATCATCCAGTGCTCCAGCTCCCACTTCTACTCCAAGCAAAACCGTCGACTACACAGAAAACGAAGATGCTTCTTCTCTCGAGAGGATTGATGCCATGTCAACTCCCGCTAAACTTGTTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGTTCACCCGAAAGATATCTTATGAGTCCTGATGACCACCCAACCAATTCTTTGAACAAGTTAGCTAGGCGGCCAACTCGCTCAAGATCATTGAGATTTGACAGCCCAGTGAAGAATGAGGAGGTTGTGAATGAAGACAATGCCGGTGGATTACCAATTGATGATGATGTTTTTGACATCCTCCCAGGAAAACTTGTCCAATCGGTATGCCTTTTCTTTTAA 1419 0.444 MKKRNLQSSKVQSPNPVQFSSKTPEKLSQRNRTCGVALSVADIKEVGKGLQNRKRHCETTSSPPPSKSVRRQILQWSSPSKSKSTNDDPYKLPEKYEILDQFFDRLDTLISMFRLKGKTPSFMEISHRIESLTDRYRSIRFTHGHLAQLKFILPDAIVLKKFLVHDERTSCMKQDIHISLAPEAVESDVKMPPQRGRVSLRKLFYARLREFWESHPEGDEIPEGTLPEPFNRPKNVNILDTSETRLPTKLSLCMRYNDIVNNVESASIDANMSAPVETSIELPNERLAAASHIAPFFRARFSLKLQQNLADTVQQISQVDSVQPSPAEWASQAASSENYSRICASLESSSAPAPTSTPSKTVDYTENEDASSLERIDAMSTPAKLVSTPIRLMSATPALRSPERYLMSPDDHPTNSLNKLARRPTRSRSLRFDSPVKNEEVVNEDNAGGLPIDDDVFDILPGKLVQSVCLFF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4265g00012 472 MobiDBLite consensus disorder prediction 7 32 - -
Vium4265g00012 472 SMART CDT1_2 92 228 IPR014939 -
Vium4265g00012 472 MobiDBLite consensus disorder prediction 1 32 - -
Vium4265g00012 472 MobiDBLite consensus disorder prediction 346 366 - -
Vium4265g00012 472 PANTHER DNA REPLICATION FACTOR CDT1 8 468 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vium4265g00012 472 MobiDBLite consensus disorder prediction 56 86 - -
Vium4265g00012 472 Pfam DNA replication factor CDT1 like 92 188 IPR014939 -
Vium4265g00012 472 MobiDBLite consensus disorder prediction 47 90 - -
Vium4265g00012 472 MobiDBLite consensus disorder prediction 405 427 - -
Vium4265g00012 472 SUPERFAMILY "Winged helix" DNA-binding domain 86 230 IPR036390 -
Vium4265g00012 472 CDD Cdt1_m 77 234 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4265g00012 Vium-Chr4265 73584 76085 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4265g00012 9 468 Core DNA Replication Machinery Family AT2G31270 33.884 4.80e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4265g00012 K10727 - gmx:100778818 530.406