Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4265g00011 ATGGGTTTCCGTTTCCCTGCAATTAGAAGGGCTTCATTTACTGGTAGCCAATCATCTTCAAAAGCTGTAAACATGGCAAAGGGGTATTTTGCAGTGTATGTAGGAGAGAGAATGAAACGGTTTGTGATCCCCATGTCATACTTGAACCAACCTTCATTTCAAGACTTGCTGAGTCAAGCAGAGGAAGAATTTGGATACAATAATCCGATGGGTGGTCTTACAATTCCTTGCACAGAAGATGTTTTTTTGCATAAACAGAAAACAATGGGTTTTCGCTTACCAGGTATAAGACGATCATCATTTAGTGGAAGCCAAACATTCTCTTGCAAGGATGCAGAAGTCCCAAAAGGGTATCTTGCTGTGTATGTTGGAGAGAAAATGAAGAGGTTCTTGATACCAGTGTTGTTCTTGAACGAGCCTTTATTTCAAGAATTGCTCAGACAAGCTGAAGAGAAGTTTGGTTTTTGCCATCCCATGGGTGGTCTCACCATTCCCTGCGAAGAGGCTGTGTTCTTAAGCATAGCCTCTCGTTTGAACCAGCAATAA 546 0.4176 MGFRFPAIRRASFTGSQSSSKAVNMAKGYFAVYVGERMKRFVIPMSYLNQPSFQDLLSQAEEEFGYNNPMGGLTIPCTEDVFLHKQKTMGFRLPGIRRSSFSGSQTFSCKDAEVPKGYLAVYVGEKMKRFLIPVLFLNEPLFQELLRQAEEKFGFCHPMGGLTIPCEEAVFLSIASRLNQQ 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4265g00011 181 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 85 IPR003676 GO:0009733
Vium4265g00011 181 Pfam Auxin responsive protein 14 84 IPR003676 GO:0009733
Vium4265g00011 181 Pfam Auxin responsive protein 100 177 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4265g00011 Vium-Chr4265 63278 68019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4265g00011 14 82 Calmodulin-binding Proteins AT3G43120 44.928 1.23e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4265g00011 - K14488 pcin:129286196 234.187