Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4265g00006 ATGGCCATCAGAAAATCAAACAAGACTTCTCAAACCACAGTCCTCAAGCAAATCCTCAAAAGATGTTCCAGCTTGGGAAAGAAGAACGACTACGACCATGACGATTATGCCCTTCCTCTCGATGTCCCCAAAGGCCACTTCGCTGTCTACGTCGGAGAAAACAGAAGTAGATACATTGTTCCCATCTCCTTTTTGACTCATCCTCAGTTTCAGTCTCTCCTTCGACAAGCTGAGGAAGAGTTTGGCTTCGATCACGATATGGGACTCACTATACCCTGCCAAGAAGTTGTTTTCCGCTCTCTAACATCCACGCTACGATGA 321 0.4611 MAIRKSNKTSQTTVLKQILKRCSSLGKKNDYDHDDYALPLDVPKGHFAVYVGENRSRYIVPISFLTHPQFQSLLRQAEEEFGFDHDMGLTIPCQEVVFRSLTSTLR 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4265g00006 106 Pfam Auxin responsive protein 34 104 IPR003676 GO:0009733
Vium4265g00006 106 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 40 105 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4265g00006 Vium-Chr4265 31796 32548 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4265g00006 39 101 Calmodulin-binding Proteins AT3G43120 55.556 4.52e-21 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4265g00006 K14488 - qsu:112040183 189.119