Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4265g00002 ATGGACGAGGAGGAACGTGGCGTAGGAATTTCTGTCCCGAGGGTTGTCGCCGCCAACCAAACCCCAGAGCAACTCGTCTCCAGGGCCATAGCCCCCGTCAAGAAGGAATTCCTCCGGCCCCCTCCGGTTCGGTCTTCCGCTCCAGACAACGACGTTTCCATTCCCAACGAAAACAAGACCTCTGTTCTGGCCAAGGAGAAGAAGTCTAAGCGCCAACTCAAACGCGAACGTCGTCAGGTTCAAAAGTCGGCAAAAAACCTATGTCCACAAATTGCGAAGACGGGGGATGTTAGTTCGTGTCTGTATAAAGACAAATGTCGTTTCAGCCATGATTTGGAAGGCTTCAAGGCGCAGAAACCGTCTGATCTAGATGGACAATGCCCGTTCGTTAAATCTGGAGTTTCTTGCCCTTATGGCTTAACGTGTAGATTTTCGAGTACGCATGAAGGTGGTGTGCCTTCTGGCGTTCGAAATGGTCCGAAGAATAGTTCCGAGGTGAATGGATTGAGCAAGGAGGTTCAAAAGCTTTTGTGGAAAAATAAGATGACCTTCTCGAAGGCAGATGCCAAACTCAAAAGTCTCGGTCTCCTGGGATCGTCTAAGTCAATAAGGAATGACTTGGAAAATAAAGAGGGAGTTGACACTGGTTCAAATAAGTGTGATCATTCTGATGACAGTGGCTCTTGTGTTGTTACGTCTGACTCAGGTTCTAAGTTGGACTGCCCTGCTGAAGTTATGAAAGATGGTGAGAATGACATAGATGGAAAATCTGAATCTGATGAACTTTGTCCCCTGAAGCGAAGAAAAACTGAAGAAAATTGTGGTCCTGAAGAGGCACAAAATGAAGAGAATTGTGGTCCTAAGGAGTCAAAAAATGAAGGTGTTACTGAGAAAATTGTTGAAAGGAGATGCACGAAATCTGAAGCTGATGCTATAGTCCCGGAAACTGATATAAGCCTGAAGCCTCACTCGCGTGAGAAGAAGCTTATTGATTTCAGGGGGAAGTTGTATCTTGCACCCTTAACTACTGTTGGCAATCTCCCTTTCCGGAGAGTTTGCAAAGAATTAGGTGCTGATGTGACTTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCATCAGAATGGGCATTGCTAAGACGACATTCATCTGAAGATTTTTTTGGTGTACAAATCTGTGGGGCATATCCAGATACTGTGGCACGAACAGTTGAACTAATAGAGCAAGAATGTACTGTAGATTTTATTGACATAAATATGGGTTGCCCTATTGACATAGTTGTGAATAAGGGTGCTGGGTCAGCTCTTTTAACAAAACCAACGCGGATGAAAAGTATCGTAGAAGTAGCTTCGGGTACAGTGGATAAACCAATAACTATCAAGGTAAGGACTGCTTATTTTGAAGGGAAGAATCGCATTGATTCTCTGATAGCAGACATTGGCTCTTGGGGAGCCAGCGCGGTGACAATACATGGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGACTGGGACTATGTATACCAGTGTGCCAGGAAAGCCCCTACTACATTGCCAGTAGTGGGAAATGGAGATGTGTTTTCATTTGTAGACTGGAACAACCACAGAACTGAATGCCCTGAACTTGCTACGGACATGATTGCTCGTGGTGCACTTGTTAAACCTTGGATATTTACAGAGATCAAGGAACAAAGACATTGGGACATCAGTTCTGGGGAGCGACTAAATATTCTCAAGGATTTTGTGAATTTTGGTCTGGAACATTGGGGTTCTGACACAAAAGGGGTTGAGACAACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGCAGGTATGTACCCGTTGGTCTTTTGGATGTAGTTCCACAACGGTTAAACTGGCGTCCACCTTCTTACTATGGGCGTGATGAGCTTGAGACACTAATGGCCTCAGACTCTGCTGCTGATTGGATACGAATATCAGAGATGCTACTCGGCAAGGTTCCTGATGGCTTTACATTTGCACCAAAGCATAAATCAAACTCGTACGATAGAGCTGAAAATGGTTAA 2064 0.4501 MDEEERGVGISVPRVVAANQTPEQLVSRAIAPVKKEFLRPPPVRSSAPDNDVSIPNENKTSVLAKEKKSKRQLKRERRQVQKSAKNLCPQIAKTGDVSSCLYKDKCRFSHDLEGFKAQKPSDLDGQCPFVKSGVSCPYGLTCRFSSTHEGGVPSGVRNGPKNSSEVNGLSKEVQKLLWKNKMTFSKADAKLKSLGLLGSSKSIRNDLENKEGVDTGSNKCDHSDDSGSCVVTSDSGSKLDCPAEVMKDGENDIDGKSESDELCPLKRRKTEENCGPEEAQNEENCGPKESKNEGVTEKIVERRCTKSEADAIVPETDISLKPHSREKKLIDFRGKLYLAPLTTVGNLPFRRVCKELGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDFFGVQICGAYPDTVARTVELIEQECTVDFIDINMGCPIDIVVNKGAGSALLTKPTRMKSIVEVASGTVDKPITIKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGNGDVFSFVDWNNHRTECPELATDMIARGALVKPWIFTEIKEQRHWDISSGERLNILKDFVNFGLEHWGSDTKGVETTRRFLLEWLSYTCRYVPVGLLDVVPQRLNWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNSYDRAENG 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4265g00002 687 Coils Coil 56 83 - -
Vium4265g00002 687 Gene3D - 77 153 - -
Vium4265g00002 687 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 681 - -
Vium4265g00002 687 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 78 156 - -
Vium4265g00002 687 ProSiteProfiles Zinc finger C3H1-type profile. 82 113 IPR000571 GO:0046872
Vium4265g00002 687 MobiDBLite consensus disorder prediction 32 84 - -
Vium4265g00002 687 MobiDBLite consensus disorder prediction 270 292 - -
Vium4265g00002 687 Gene3D Aldolase class I 331 573 IPR013785 -
Vium4265g00002 687 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 331 573 - -
Vium4265g00002 687 SUPERFAMILY FMN-linked oxidoreductases 335 648 - -
Vium4265g00002 687 ProSitePatterns Uncharacterized protein family UPF0034 signature. 419 437 IPR018517 GO:0008033|GO:0017150|GO:0050660
Vium4265g00002 687 Pfam Dihydrouridine synthase (Dus) 338 572 IPR035587 -
Vium4265g00002 687 CDD DUS_like_FMN 335 570 IPR035587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4265g00002 Vium-Chr4265 1343 6618 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium4265g00002 Dus 1.6e-50 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4265g00002 K05544 - gmx:100783494 1174.46