Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4263g00004 ATGCAGTTTTTGGTTTCCAATTTCCATCCTGTTATTTATGTTTTGGTGTTTATAGGCTCTGTTCTGAAGTTGGGATGCGCGTCGTCTACACCATCGCAGCTTCAATTGGAAGCAAACGCTATAATCAATAGCGGATGGTGGAATTTGCCGCACTCACAGTCACTTCATATATGTTCATTGATTGAGGGTATACATTGCAATGATTTTGGAAGTGTAACTCGTATCACATATCTGTATTCCGAGCGACCCATTCAATTAGCAAATCTAAACCTTTCTGCTTTTAAGAATTTGGAACATCTTGAGGTCTCCTTCTGTAGTCTAGAAGGTATTATTCCATCTGAAATTGATAGTCTTTCCAAACTTACTTATCTTGATTTATCTCATACTTCCATTCATGGAGAGATACCTCTTACAATAGGAAATCTTTCCAATCTCACTTATCTCGATTTGTCCTACGATTCTATTTCTGGTCAGGTGCCTCCTTCAATGGGAAATCTAATTCAACTATCCACACTAATCATTTCTAACAACTACATTGAAGGCCCTGTTCCTTTTCAATTGTCATTCTTGAAGAATCTTACTATCATTGATCTATCTTACAACAAAATCAATGGAGCTTTGCCTATTTCACTTTCAAACCTCACAAACCTTCAAAATCTTGACATTTCACACAATCTACTCTCCGGTTCCCTTGAACCTTTCTTAGTTGGATATTTTCCATTATTGGAAACTCTGGATCTAAGCTACAATAGTCTTACCGGAGGGATTCCTCTGTCCCTACATAATGTCCGCTATGTGGACCTTTCCTTCAACAATTTGAAGGGTCCCATTCCAAACGGTGTACATCCGTTTGCGCTAATGGGGAACAAGGGTGTATGCAGCAACATTACAAATATACGAATCCAATACCAATTCCAGCCTTGTTCAGTCAGTCAGAAGAAACGAAGGAAACTGGTCATAATTCCTACTATCACCATATTTCTAATCATGATCTTCTTACTACTTCTATATCTGAGGCACAATCGCATTACAATCAAGAACAAACATTCAAGGATAAGTGAAACATCTAAGAATGGGGACTTGTTCTGCATATGGAACTATGACGGAAGCATAGCCTATGAAGATATCATCATAGTTACTGAAGACTTTGACCTCAAATATTGTATTGGAATAGGTGCGTACGGAAGTGTTTTCAAGGCTCAACTACCAAGTGGCAAGATTGTTGCGGTGAAGAAACTCCATGGCTTTGAAGCAGAGGTCCCGACTTTTGATGAGAGTTTCAGAAACGAAGCCAAAGTATTATCGAAAATAAAGCATCGACATATAGTCAAGCTCCATGGATTTTGCTTGCACAAAAGAATAATGTTTTTGATATATGAGTACATGGAGAAAGGAAGCTTGTCTTCTACCTTGTTTGATGACATGGAAGCAATTAACTTGGATTGGAGGAAGAGGGTTAACATAGTGAAAGGCACTGCACATGCTCTTTCATATCTCCATCATGATTGTGTTCCTCCTATAGTTCATAGAGACATATCAACAAGCAACGTCTTGCTTAACTCTGAGTGGGAGCCCACTGTTTCCGACTTTGGCACAGCTCGATTTCTCAACCTTGATTCATCCAATCGAACTATTGTTGTTGGAACCATTGGATACATAGCACCTGAGCTTGCATATACAATGGTTGTGAATGAAAAGTGTGATGTGTATAGCTTCGGAGTGGTGACACTGGAAACTTTGATGGGAAAACATCCTAAGGAAATACTCTCATCACTTGATTCAACTTCTACAAATAGTGACATCAAATTATGTGAAATATTGGATCAACGCCTCCCGCACCCAACATTTTCAGATTTACAACACATAGTTGTTGCTGCTATTATGGCTTTTGCATGTTTAAATCCCAATCCCTGCTTTCGTCCAACAATGAAACGCATCTCTCAATGTTTTCTTAGTCGGCTTACACCGTTCAACATTCCTTTACGTCTTATTTCATTGCAGCAGCTCATAAGTCAAGAACTCAGACAATCCTTAAAATTGTGA 2043 0.3882 MQFLVSNFHPVIYVLVFIGSVLKLGCASSTPSQLQLEANAIINSGWWNLPHSQSLHICSLIEGIHCNDFGSVTRITYLYSERPIQLANLNLSAFKNLEHLEVSFCSLEGIIPSEIDSLSKLTYLDLSHTSIHGEIPLTIGNLSNLTYLDLSYDSISGQVPPSMGNLIQLSTLIISNNYIEGPVPFQLSFLKNLTIIDLSYNKINGALPISLSNLTNLQNLDISHNLLSGSLEPFLVGYFPLLETLDLSYNSLTGGIPLSLHNVRYVDLSFNNLKGPIPNGVHPFALMGNKGVCSNITNIRIQYQFQPCSVSQKKRRKLVIIPTITIFLIMIFLLLLYLRHNRITIKNKHSRISETSKNGDLFCIWNYDGSIAYEDIIIVTEDFDLKYCIGIGAYGSVFKAQLPSGKIVAVKKLHGFEAEVPTFDESFRNEAKVLSKIKHRHIVKLHGFCLHKRIMFLIYEYMEKGSLSSTLFDDMEAINLDWRKRVNIVKGTAHALSYLHHDCVPPIVHRDISTSNVLLNSEWEPTVSDFGTARFLNLDSSNRTIVVGTIGYIAPELAYTMVVNEKCDVYSFGVVTLETLMGKHPKEILSSLDSTSTNSDIKLCEILDQRLPHPTFSDLQHIVVAAIMAFACLNPNPCFRPTMKRISQCFLSRLTPFNIPLRLISLQQLISQELRQSLKL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4263g00004 680 ProSiteProfiles Protein kinase domain profile. 383 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4263g00004 680 FunFam Leucine-rich repeat protein kinase family protein 347 461 - -
Vium4263g00004 680 ProSitePatterns Tyrosine protein kinases specific active-site signature. 507 519 IPR008266 GO:0004672|GO:0006468
Vium4263g00004 680 Gene3D Ribonuclease Inhibitor 187 301 IPR032675 -
Vium4263g00004 680 SUPERFAMILY Protein kinase-like (PK-like) 364 648 IPR011009 -
Vium4263g00004 680 Gene3D Phosphorylase Kinase; domain 1 344 461 - -
Vium4263g00004 680 FunFam MDIS1-interacting receptor like kinase 2 462 656 - -
Vium4263g00004 680 Gene3D Transferase(Phosphotransferase) domain 1 462 655 - -
Vium4263g00004 680 FunFam Nuclear pore complex protein NUP107 32 184 - -
Vium4263g00004 680 SUPERFAMILY L domain-like 48 344 - -
Vium4263g00004 680 Pfam Leucine rich repeat 168 227 IPR001611 GO:0005515
Vium4263g00004 680 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Vium4263g00004 680 Pfam Protein kinase domain 388 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4263g00004 680 PANTHER LEUCINE RICH REPEAT KINASE 2 190 652 - -
Vium4263g00004 680 ProSitePatterns Protein kinases ATP-binding region signature. 389 412 IPR017441 GO:0005524
Vium4263g00004 680 Pfam Leucine Rich Repeat 242 262 IPR001611 GO:0005515
Vium4263g00004 680 Gene3D Ribonuclease Inhibitor 32 186 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4263g00004 Vium-Chr4263 33079 35280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4263g00004 106 555 Receptor kinase-like Gene Family AT4G08850 40.812 3.06e-104 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium4263g00004 Pkinase 3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4263g00004 - - vum:124835364 957.207