Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4261g00001 ATGGAAATATTGCACGGCCGCGAAGACCTCGACGAAGCCACGACAGACGGCAAGACGTTCGATGACCTCGGCCTAGCGGAGTGGGTCGTTAGTACGTGCCGGGAGCTTGGAATGCGGATGCCACGACACGTGCATCAACGTTGCATACTGCCTGTGCTAGAGGGCCGACACGTGCTTGGCATCAACGAGCCTGGGAGCGGAAAAACAGCGGCCTTCGCTCTTCCGATCCTGCATCTTCTCGTTGAGCACCCCTTTGGCGTTTTTGCACTCGTAGTGACGCCCACGCGCGAACTAGCGCTTCAGCTGGCGGAGCAGTTCCGCGTTCTGGGCTCTACCGTGCACCTCCACATCACGGTTGTGGTAGGCGGCATGAATATGCTCAAGCATGCGAAGGATTTGATTGCAAGGCCGCACCTCGTCATTGCCACACTTGGGAGAATCCACGTCTTGCTCCATGAGAACACTGATATTTCTCCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAATTCTGGATGCTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAATGCTTACCTGAAAATCAACAAAATCTGTTCTTTTCTGCGACAACTACAAGTAATCTGCAAAAGTTGCAAGAACTTTACCAAGATAAGATGTATGTCTATGAGGCATATGAAGGTTTTAAAACAGTTGAATCACTTAAGCAACAAGTGATATTCATTCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCAAAAATGGAGGATATGGGAATTCGGTCTGCCATCGTGTTTATCTCAACATGTAGGTATATTTCTACATTGTATGTTTAG 843 0.4721 MEILHGREDLDEATTDGKTFDDLGLAEWVVSTCRELGMRMPRHVHQRCILPVLEGRHVLGINEPGSGKTAAFALPILHLLVEHPFGVFALVVTPTRELALQLAEQFRVLGSTVHLHITVVVGGMNMLKHAKDLIARPHLVIATLGRIHVLLHENTDISPVFSRTKFLVLDEADRILDACFQEELKFIFQCLPENQQNLFFSATTTSNLQKLQELYQDKMYVYEAYEGFKTVESLKQQVIFIPKKVKDVYLMHILSKMEDMGIRSAIVFISTCRYISTLYV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4261g00001 280 SMART ultradead3 37 237 IPR014001 -
Vium4261g00001 280 Gene3D - 8 222 IPR027417 -
Vium4261g00001 280 PANTHER RNA HELICASE 15 278 - -
Vium4261g00001 280 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 168 176 IPR000629 -
Vium4261g00001 280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 218 IPR027417 -
Vium4261g00001 280 Pfam DEAD/DEAH box helicase 44 211 IPR011545 GO:0003676|GO:0005524
Vium4261g00001 280 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4261g00001 Vium-Chr4261 9613 10765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4261g00001 2 278 Eukaryotic Initiation Factors Gene Family AT3G13920 29.496 2.49e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4261g00001 K14778 - gmx:100798597 431.024