Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4260g00007 ATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCAACCTCCACCTTCGCTCACGTCAATTCTACCCGCCTGCACACCTCAAGAATATCATGGGGGAGTGACCTTTCTGGGTAAGAGATCCATGTCATTTTCATCAGGAATTGAGCACGGAGAAGAGGCCAATGCTGAGGAAGATTTGTCCGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGTAATAAGCTTGAGCCAGAGAGGAAAATGCAACTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCAAGGTGGAAGACCAAGCAGTTGGAGAAAGACTACGATCTTCTCAAAAGACAGTATGAAGCCGTCAAGTCAGATAATGATTCGCTTCAAACTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCCATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAACAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTCTCTACACATCAGCCGAGCAGAACCCTGTTTCCATCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGACCTTCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTCTGTGCCATGGATGATCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 840 0.4607 MAFFPANFMLQTPHHDDHQPPPSLTSILPACTPQEYHGGVTFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDSLQTQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRTLFPSSARPAGVAQLFQTSSRPDLPCQKIDQMVKEESLSNMFCAMDDQSGFWPWLEQQHFN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4260g00007 279 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Vium4260g00007 279 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Vium4260g00007 279 CDD homeodomain 76 132 IPR001356 GO:0003677
Vium4260g00007 279 SUPERFAMILY Homeodomain-like 66 133 IPR009057 -
Vium4260g00007 279 FunFam Homeobox-leucine zipper protein ATHB-13 68 135 - -
Vium4260g00007 279 Gene3D - 68 137 - -
Vium4260g00007 279 MobiDBLite consensus disorder prediction 179 199 - -
Vium4260g00007 279 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
Vium4260g00007 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 211 IPR045224 GO:0003700
Vium4260g00007 279 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Vium4260g00007 279 MobiDBLite consensus disorder prediction 176 199 - -
Vium4260g00007 279 SMART HOX_1 74 135 IPR001356 GO:0003677
Vium4260g00007 279 MobiDBLite consensus disorder prediction 54 82 - -
Vium4260g00007 279 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Vium4260g00007 279 Coils Coil 123 171 - -
Vium4260g00007 279 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4260g00007 Vium-Chr4260 63421 65651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4260g00007 1 279 Homeobox Transcription Factor Family AT1G69780 65.085 1.21e-123 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4260g00007 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4260g00007 K09338 - gmx:100814080 525.013