Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4260g00006 ATGTGGCCTAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCAACCTCCACCTTCGCTCACGTCAATTCTACCCGCCTGCACACCTCAAGAATATCATGGGGGAGTGACCTTTCTGGGTAAGAGATCCATGTCATTTTCATCAGGAATTGAGCACGGAGAAGAGGCCAATGCTGAGGAAGATTTGTCCGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGTAATAAGCTTGAGCCAGAGAGGAAAATGCAACTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCAAGGTGGAAGACCAAGCAGTTGGAGAAAGACTACGATCTTCTCAAAAGACAGTATGAAGCCGTCAAGTCAGATAATGATTCGCTTCAAACTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCCATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAACAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTCTCTACACATCAGCCGAGCAGAACCCTGTTTCCATCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGACCTTCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTCTGTGCCATGGATGATCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 864 0.4606 MWPKTCNEMAFFPANFMLQTPHHDDHQPPPSLTSILPACTPQEYHGGVTFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDSLQTQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRTLFPSSARPAGVAQLFQTSSRPDLPCQKIDQMVKEESLSNMFCAMDDQSGFWPWLEQQHFN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4260g00006 287 CDD homeodomain 84 140 IPR001356 GO:0003677
Vium4260g00006 287 SUPERFAMILY Homeodomain-like 75 141 IPR009057 -
Vium4260g00006 287 SMART HOX_1 82 143 IPR001356 GO:0003677
Vium4260g00006 287 MobiDBLite consensus disorder prediction 187 207 - -
Vium4260g00006 287 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Vium4260g00006 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 63 219 IPR045224 GO:0003700
Vium4260g00006 287 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Vium4260g00006 287 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Vium4260g00006 287 MobiDBLite consensus disorder prediction 184 207 - -
Vium4260g00006 287 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Vium4260g00006 287 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Vium4260g00006 287 Gene3D - 76 145 - -
Vium4260g00006 287 MobiDBLite consensus disorder prediction 62 90 - -
Vium4260g00006 287 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
Vium4260g00006 287 Pfam Homeobox associated leucine zipper 139 179 IPR003106 GO:0006355|GO:0043565
Vium4260g00006 287 Coils Coil 131 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4260g00006 Vium-Chr4260 63421 65651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4260g00006 5 287 Homeobox Transcription Factor Family AT1G69780 64.667 7.00e-124 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium4260g00006 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4260g00006 K09338 - gmx:100808033 526.554