Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4260g00006 | ATGTGGCCTAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCAACCTCCACCTTCGCTCACGTCAATTCTACCCGCCTGCACACCTCAAGAATATCATGGGGGAGTGACCTTTCTGGGTAAGAGATCCATGTCATTTTCATCAGGAATTGAGCACGGAGAAGAGGCCAATGCTGAGGAAGATTTGTCCGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGTAATAAGCTTGAGCCAGAGAGGAAAATGCAACTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCAAGGTGGAAGACCAAGCAGTTGGAGAAAGACTACGATCTTCTCAAAAGACAGTATGAAGCCGTCAAGTCAGATAATGATTCGCTTCAAACTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCCATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAACAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTCTCTACACATCAGCCGAGCAGAACCCTGTTTCCATCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGACCTTCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTCTGTGCCATGGATGATCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA | 864 | 0.4606 | MWPKTCNEMAFFPANFMLQTPHHDDHQPPPSLTSILPACTPQEYHGGVTFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDSLQTQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRTLFPSSARPAGVAQLFQTSSRPDLPCQKIDQMVKEESLSNMFCAMDDQSGFWPWLEQQHFN | 287 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4260g00006 | 287 | CDD | homeodomain | 84 | 140 | IPR001356 | GO:0003677 | |
Vium4260g00006 | 287 | SUPERFAMILY | Homeodomain-like | 75 | 141 | IPR009057 | - | |
Vium4260g00006 | 287 | SMART | HOX_1 | 82 | 143 | IPR001356 | GO:0003677 | |
Vium4260g00006 | 287 | MobiDBLite | consensus disorder prediction | 187 | 207 | - | - | |
Vium4260g00006 | 287 | Pfam | Homeodomain | 84 | 137 | IPR001356 | GO:0003677 | |
Vium4260g00006 | 287 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 63 | 219 | IPR045224 | GO:0003700 | |
Vium4260g00006 | 287 | ProSitePatterns | 'Homeobox' domain signature. | 114 | 137 | IPR017970 | GO:0000981|GO:0006355 | |
Vium4260g00006 | 287 | ProSiteProfiles | 'Homeobox' domain profile. | 79 | 139 | IPR001356 | GO:0003677 | |
Vium4260g00006 | 287 | MobiDBLite | consensus disorder prediction | 184 | 207 | - | - | |
Vium4260g00006 | 287 | PRINTS | Lambda-repressor HTH signature | 110 | 119 | IPR000047 | GO:0003677 | |
Vium4260g00006 | 287 | PRINTS | Lambda-repressor HTH signature | 119 | 135 | IPR000047 | GO:0003677 | |
Vium4260g00006 | 287 | Gene3D | - | 76 | 145 | - | - | |
Vium4260g00006 | 287 | MobiDBLite | consensus disorder prediction | 62 | 90 | - | - | |
Vium4260g00006 | 287 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 76 | 143 | - | - | |
Vium4260g00006 | 287 | Pfam | Homeobox associated leucine zipper | 139 | 179 | IPR003106 | GO:0006355|GO:0043565 | |
Vium4260g00006 | 287 | Coils | Coil | 131 | 179 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4260g00006 | Vium-Chr4260 | 63421 | 65651 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4260g00006 | 5 | 287 | Homeobox Transcription Factor Family | AT1G69780 | 64.667 | 7.00e-124 | 353 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Vium4260g00006 | Homeodomain | 1.4e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4260g00006 | K09338 | - | gmx:100808033 | 526.554 |