Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4258g00001 ATGGAACCCAACAACGCAGACGCTTTCCGACCTTCTTCTTCACCCTCATCTTCCCCCAGCTCCAGGAGAATTTCCGGGATTTTGTCGCCCACAAATATCATTCAGGCTCCGTTATCGGCGCTATTGGAATATTCCGGCATCCTTCCGTCGCGCTCGTCTAACCACCACAGCCACCCAGCCCCTGACGCAGTTAACAATGACGGCGAGGTTTCGATTAGGATCATCGGTCCCGCGGAGCAGGAGCAGCAACCCCGGGAGGAACAGCATAGCCCTTCTGTCGCTTCGGGATTGGTCGTGGGACTCGCGCATTCGCAAAACGATGCCGTGTTGCCCTCGTCGTCGCCGCGCAGCGATGGTGCTGAGGAAAGCACTGGCCCTGGAGGGGACGGCGTTGGGAGAGACTCTTCTTACCAGAGATACGACATTCAGCATGCTGCCAGGTGGATTGAGCAGGTCTTGCCGTTTTCGTTGCTTCTCTTGGTTGTTTTCATAAGGCAGCATTTGCAAGGGTTTTTCGTGACAATTTGGATTGCGGCTGTGCTTTTCAAGTCGAATGATATTATGAGGAAACAGACTGCGTTGAAGGGAGAGAGGAAAATACCGGTTTTGATTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTCATGTATCCCTTGATCATGCTTCCTCCCAAGGAAATACCGCCTTTCTGGCATGCCATTTTCATCATCATGGTCAATGATACTTTGGTCCGCCAAGCTGCAATGGTAGTCAAGTGTATGTTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATATCTTCTTCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCGTCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAATAAAGGCATTGTCACGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCCGGTGATCTATGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTACGTTGTAAACATATTTTCTGTGAAGACTGCGTATCGGAGTGGTTTGAGAGAGAAAGGACCTGTCCATTGTGTATGGCTTTGGTAAAACCTGCAGACCTTAGGTCATTTGGAGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA 1296 0.4776 MEPNNADAFRPSSSPSSSPSSRRISGILSPTNIIQAPLSALLEYSGILPSRSSNHHSHPAPDAVNNDGEVSIRIIGPAEQEQQPREEQHSPSVASGLVVGLAHSQNDAVLPSSSPRSDGAEESTGPGGDGVGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDIMRKQTALKGERKIPVLIGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKEIPPFWHAIFIIMVNDTLVRQAAMVVKCMLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAIKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCMALVKPADLRSFGDGSTSLFFQLF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4258g00001 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 417 IPR013083 -
Vium4258g00001 431 CDD RING-HC_RNFT1-like 368 407 - -
Vium4258g00001 431 ProSiteProfiles Zinc finger RING-type profile. 370 407 IPR001841 -
Vium4258g00001 431 MobiDBLite consensus disorder prediction 7 28 - -
Vium4258g00001 431 Pfam Zinc finger, C3HC4 type (RING finger) 368 409 - -
Vium4258g00001 431 ProSitePatterns Zinc finger RING-type signature. 385 394 IPR017907 -
Vium4258g00001 431 SMART ring_2 370 407 IPR001841 -
Vium4258g00001 431 SUPERFAMILY RING/U-box 362 413 - -
Vium4258g00001 431 MobiDBLite consensus disorder prediction 108 135 - -
Vium4258g00001 431 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 16 431 IPR044235 GO:0061630|GO:1904294
Vium4258g00001 431 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4258g00001 Vium-Chr4258 2359 6516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4258g00001 11 431 C3H Transcription Factor Family AT5G01960 71.789 0.0 628