Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4257g00006 ATGGCAGAGAAGATTCAGCTTCTTGAAATATCTAAAAGGAAGCTGCTGGGACAAAGTGTGAGTTGTTGTTCCTATGATGAACTCCAAGAAATCGAAGATCAGCTGCAGAGAAGTTTGCTAAGAGTCAGACAAAGAAAGGCTCAACTATACATGGAGCAGATTGATCAGCTACGATCCCAGGAGAGTAACTTGCTCCAAGAGAATGCCAAATTAACTGAAAGGATTCTGGTGTTTCCCTTCACGCTGCCTCCTCTTTCTACTATGCCAACACCGCATACATTCACTTCTCCCATTAGTCTCAAATTAAATGAAGATAACTTCTTGGTTTGGAAACACCAAGCTTTAGCCACCGTTACTGGTCTGCATCTTATGAAATTTCTTGAGAGTTCTTCATACCCTCCCAAATATGTCACTCCTGATGCAGCTGCATCGGATGCCGTCAACCCCCTTGACCTCGATCACCTTTAA 468 0.4316 MAEKIQLLEISKRKLLGQSVSCCSYDELQEIEDQLQRSLLRVRQRKAQLYMEQIDQLRSQESNLLQENAKLTERILVFPFTLPPLSTMPTPHTFTSPISLKLNEDNFLVWKHQALATVTGLHLMKFLESSSYPPKYVTPDAAASDAVNPLDLDHL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4257g00006 155 Coils Coil 25 74 - -
Vium4257g00006 155 Pfam K-box region 2 75 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium4257g00006 155 ProSiteProfiles K-box domain profile. 1 82 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4257g00006 Vium-Chr4257 49944 54107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4257g00006 1 76 MADS-box Gene Family AT4G22950 51.316 3.95e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4257g00006 - - vum:124837266 300.827