Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4254g00015 ATGGCATCGTCGAAGGTGGTGGTCACGACGAATCCCGATGTGGCGCCGCCGCAGAGTTCGATTTCGAGCCAGGTATGGGACGAGGTGGTCGGGGGCGCTGAGTCTCAGGACATGGCAATCAGCCTCCACGATTTGTTGTTGACCTCCGTTGCCGGAAACGACGCCGTTCCGCCCTCTCACGGGGGAAGGGGAAAGAGAAAGGCCGTGGAGGAAGCCGTCGTGGATAGGGCTACTCTTCAGAAACAGAGAAGGATGATAAAAAACAGAGAATCTGCCGCTAGGTCCAGGGAACGCAAGCAGGCTTATACAGTTGAGTTAGAGTCTTTGGTTACACTTCTCGAGGAAGAGAATGCTCGATTGTTAAAGGAAGAGGCTGAAAGGAGAAGGCAGAGGTTCAATCAGCTCATGGAGTGTCTTATTCCAGTTGAGGAGAAGAGTAAACCAAGACGAATGCTTCGGCGAGTGAATTCAGCCCAGTGGTGA 483 0.5321 MASSKVVVTTNPDVAPPQSSISSQVWDEVVGGAESQDMAISLHDLLLTSVAGNDAVPPSHGGRGKRKAVEEAVVDRATLQKQRRMIKNRESAARSRERKQAYTVELESLVTLLEEENARLLKEEAERRRQRFNQLMECLIPVEEKSKPRRMLRRVNSAQW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4254g00015 160 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
Vium4254g00015 160 SUPERFAMILY Leucine zipper domain 80 131 IPR046347 GO:0003700|GO:0006355
Vium4254g00015 160 MobiDBLite consensus disorder prediction 1 20 - -
Vium4254g00015 160 Pfam bZIP transcription factor 78 127 IPR004827 GO:0003700|GO:0006355
Vium4254g00015 160 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 79 138 - -
Vium4254g00015 160 Gene3D - 79 137 - -
Vium4254g00015 160 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 78 130 IPR004827 GO:0003700|GO:0006355
Vium4254g00015 160 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 56 159 IPR043452 GO:0003700|GO:0045893
Vium4254g00015 160 SMART brlzneu 76 140 IPR004827 GO:0003700|GO:0006355
Vium4254g00015 160 Coils Coil 103 135 - -
Vium4254g00015 160 CDD bZIP_plant_BZIP46 80 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4254g00015 Vium-Chr4254 94217 96312 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4254g00015 61 160 bZIP Transcription Factor Family AT5G44080 59.804 2.43e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium4254g00015 bZIP_1 2e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4254g00015 K14432 - gmx:100101878 172.555