Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4254g00007 ATGGATGCTGACAACATCTCTAGATCAAGTAACACTTACATCGGAAAGCTGAGATCAAATTTTCTTGGTACCAAGTTCATTATATATGATACGCAGCCTCCATACTCTTCAGCTCATATATGCCCTCCTGGAGCTGGGAAGACGAGCCGCAGATTTTATTCGAAAAAGGTGTCGCCGAAAGTTCCATCTGGTAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTGCTCGGGACTAGAGGCCCCAGAAAGATGCACTGTGTCATGCATTCCATACCAGCTTCAGCACTCGATGCAGGCGGCACCGTTCCCGGCAAGCCGGAGCTTCTTCCCCGTTCCCTCGAGGACTCGTTTCGGAGCATCTCGTTTTCGAAGTCGCTCGACCGCGCCATCGAGTTCAGTAGCTCGCGGTTTTCTGATATTGGGGAATCCATTCTGGAGGACGATGATGGGAAGCTGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGGTGGCACGAACAGTTACAATGTTGGTGCCTTAATTTTCGCGGCCGAGTAACTGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCTGCTGCCGGTGCACCTACACCCTCCCAACCGGCTCCACCGGAACATGACAAGATCATTCTTCAGTTTGGCAAAGTTGGGAAAGACATGTTCACGATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAACTGGCTTGTGAATAA 768 0.4831 MDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGAGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDAGGTVPGKPELLPRSLEDSFRSISFSKSLDRAIEFSSSRFSDIGESILEDDDGKLRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4254g00007 255 PANTHER TUBBY-RELATED 1 253 - -
Vium4254g00007 255 ProSitePatterns Tub family signature 1. 177 190 IPR018066 -
Vium4254g00007 255 SUPERFAMILY Tubby C-terminal domain-like 2 255 IPR025659 -
Vium4254g00007 255 PRINTS Tubby superfamily signature 65 92 IPR000007 -
Vium4254g00007 255 PRINTS Tubby superfamily signature 13 37 IPR000007 -
Vium4254g00007 255 PRINTS Tubby superfamily signature 177 193 IPR000007 -
Vium4254g00007 255 PRINTS Tubby superfamily signature 159 176 IPR000007 -
Vium4254g00007 255 PRINTS Tubby superfamily signature 233 255 IPR000007 -
Vium4254g00007 255 PRINTS Tubby superfamily signature 212 231 IPR000007 -
Vium4254g00007 255 ProSitePatterns Tub family signature 2. 240 255 IPR018066 -
Vium4254g00007 255 Gene3D Tubby Protein; Chain A 1 249 IPR025659 -
Vium4254g00007 255 Pfam Tub family 1 250 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4254g00007 Vium-Chr4254 65282 67049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4254g00007 1 255 TUB Transcription Factor Family AT1G25280 71.956 6.59e-128 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium4254g00007 Tub 6.3e-92 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4254g00007 K19600 - gmx:100814578 482.641