Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4254g00006 ATGTCATTCCGCAGCATAGTTCGTGATGTGAGGGATAGTTTTGGGAGCTTGTCTAGGCGTAGTTTTGATGTCAGACTTACGGGTCATCATAGAGGAAAATCTCAAGGATCGGTGCAGGATTTACATGATCAACCTCTAGTGATTCAAAATAGCCGCTGGGCGAGTTTACCCCCAGAATTGCTATTTGATATCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTTCTCGAAAGCACGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAACATGTGCAAAGAAATTGTTAAGAGCCCAGAGTTCTGTGGCAAGCTTACATTCCCCGTGTCCTTGAAGCAGCCTGGACCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTGTGTCTCAGCCCTGCTTTGTTGGTTGAAAATGGGAAATTCCTTCTTTCTGCTAAGAGGACTAGGAGAACAACTTACACTGAGTATGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAACACTTACATCGGAAAGCTGAGATCAAATTTTCTTGGTACCAAGTTCATTATATATGATACGCAGCCTCCATACTCTTCAGCTCATATATGCCCTCCTGGAGCTGGGAAGACGAGCCGCAGATTTTATTCGAAAAAGGTGTCGCCGAAAGTTCCATCTGGTAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTGCTCGGGACTAGAGGCCCCAGAAAGATGCACTGTGTCATGCATTCCATACCAGCTTCAGCACTCGATGCAGGCGGCACCGTTCCCGGCAAGCCGGAGCTTCTTCCCCGTTCCCTCGAGGACTCGTTTCGGAGCATCTCGTTTTCGAAGTCGCTCGACCGCGCCATCGAGTTCAGTAGCTCGCGGTTTTCTGATATTGGGGAATCCATTCTGGAGGACGATGATGGGAAGCTGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGGTGGCACGAACAGTTACAATGTTGGTGCCTTAATTTTCGCGGCCGAGTAACTGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCTGCTGCCGGTGCACCTACACCCTCCCAACCGGCTCCACCGGAACATGACAAGATCATTCTTCAGTTTGGCAAAGTTGGGAAAGACATGTTCACGATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAACTGGCTTGTGAATAA 1284 0.4642 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSQGSVQDLHDQPLVIQNSRWASLPPELLFDIIRRLEESENTWPSRKHVVACAAVCQSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGAGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDAGGTVPGKPELLPRSLEDSFRSISFSKSLDRAIEFSSSRFSDIGESILEDDDGKLRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4254g00006 427 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Vium4254g00006 427 Pfam Tub family 114 422 IPR000007 -
Vium4254g00006 427 Gene3D Tubby Protein; Chain A 112 421 IPR025659 -
Vium4254g00006 427 Gene3D - 48 101 - -
Vium4254g00006 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Vium4254g00006 427 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Vium4254g00006 427 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Vium4254g00006 427 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Vium4254g00006 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vium4254g00006 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vium4254g00006 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Vium4254g00006 427 Pfam F-box domain 53 100 IPR001810 GO:0005515
Vium4254g00006 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Vium4254g00006 427 PANTHER TUBBY-RELATED 29 425 - -
Vium4254g00006 427 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Vium4254g00006 427 CDD F-box_AtTLP-like 53 97 - -
Vium4254g00006 427 FunFam Tubby-like F-box protein 110 427 - -
Vium4254g00006 427 FunFam Tubby-like F-box protein 48 101 - -
Vium4254g00006 427 SUPERFAMILY Tubby C-terminal domain-like 102 427 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4254g00006 Vium-Chr4254 63458 67049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4254g00006 1 427 TUB Transcription Factor Family AT1G76900 70.282 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium4254g00006 Tub 2.6e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4254g00006 K19600 - gmx:100814578 829.706