Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4254g00005 ATGGTAGAAATGAAGGGAGTGATGAATGCAATGCATGGGTTGAAACCAGTGTTGCTGATGGTGTTAGTGCAAATTGCATACACTGCTGTCAATGTGCTTTTCAAACTCGCCATAAACGACGGAATGAGTGTAAAAGTTGCCACAACGTATCGTCTCGCTTTTGGATCTGCTTTCACTGTTCCTCTCGCTCTCATTTCTGAAAGGAAGAAAAGACCAAAGATGACTTGGAGGGTGCTTTTCATGGCATTTCTTTGTGGATTATTCGGGGGAAGTTTATTTCAGAATCTTTTCTACCAGTCCTTGGCTTTAACATCAGCAACGTTTGCCTCCGCTCTATACAATCTCATTCCGGCTATCACCTTTGTGATGGCCATTTCCTGCGGTTTCGAAAGGTTGAATTGGAGGGCAGCCGCAGGAAGGGCCAAGGTGTTGGGAACTATAATTGGGATTGGTGGGGCAATGGTGTTGACTTTTATCAAAGGTGCAGAGATTAATATCTGGCCTTTCCACATCAACCTTATGCATCCACGTCAGCACCAAGATGGCCACGTGGCACAGTTAAATTCTGACTCTAGCAATACATTGTTGGGGGCTCTTTGTTCCATATTAAGCTGCTTCTCTTTTTCTCTCTGGCTCACCATTCAGGCTAAGATGAGCAAAGAATACCCTTGTCACTATTCAAGCACGGCTCTGATGTCTACGGCAGGAGCAATACAGGCCGCTGCTTTTGGTTTCTGTGTTGAGAGAGATTTCAGCCAATGGAAGTTGGGTTGGAATATCAGGCTACTTGCTGTGGCTTATTCGGGAATCGTGGCCTCTGGAATAGTAGTTATTATTACTGCATGGTGCATACAAATGAGAGGGCCTCTTTTTGCGTCTGTTTTCAACCCGCTAATGCTTGTGCTTGTGGCTATTGCTGGTTCTTTGATGCTCGACGAGAATTTGTATGTAGGAAGTGTGGTTGGAGCAGTGCTGATTGTGTGTGGGTTGTACATGGTTCTGTGGGGTAAAAGTAAAGAGATGAAGAACATCACTCAGTTAGTGCCATCGGAGACCATCCGAGAAGCTGAAGCCGTAGAAGTTGTTGTCGTGTCCACCCCAATGGATCATGATAAATGTGACCACAACAACCGAAGCGAAATCACTGCTGTTACAAGGAATCTTGACAAAGATTGTGAGGATTTGACAAAACAATAA 1197 0.4478 MVEMKGVMNAMHGLKPVLLMVLVQIAYTAVNVLFKLAINDGMSVKVATTYRLAFGSAFTVPLALISERKKRPKMTWRVLFMAFLCGLFGGSLFQNLFYQSLALTSATFASALYNLIPAITFVMAISCGFERLNWRAAAGRAKVLGTIIGIGGAMVLTFIKGAEINIWPFHINLMHPRQHQDGHVAQLNSDSSNTLLGALCSILSCFSFSLWLTIQAKMSKEYPCHYSSTALMSTAGAIQAAAFGFCVERDFSQWKLGWNIRLLAVAYSGIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLDENLYVGSVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAVEVVVVSTPMDHDKCDHNNRSEITAVTRNLDKDCEDLTKQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4254g00005 398 Pfam EamA-like transporter family 15 156 IPR000620 GO:0016020
Vium4254g00005 398 Pfam EamA-like transporter family 196 334 IPR000620 GO:0016020
Vium4254g00005 398 PANTHER WAT1-RELATED PROTEIN 15 346 IPR030184 GO:0016020|GO:0022857
Vium4254g00005 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 149 - -
Vium4254g00005 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 256 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4254g00005 Vium-Chr4254 51790 53970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4254g00005 14 388 Nodulin-like Gene Family AT1G25270 39.842 1.23e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4254g00005 - - gmx:100798755 653.284