Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4254g00004 ATGAGAGATATAGGGAAAGTAGTGCATGGGTTGAAACCAGCCCTGCTGATGTTGATGGTGCAGATTGCATTTGCTTCCGTGAACGTGCTCTACAAACTTGCCATAAATGATGGAATGAGCGTGAGAATAATCACTGCCTACCGTCTCATTTTCGCTGCAGCTTCTACAGTTCCTCTTGCTCTTATTTTTGAAAGGAAAAACATACGAACGCTGACTTGGAGGGTGATTTTAAAGTCATTTTTCTGTGGACTATTCGGGGGAAGTCTATTCCAAAACCTTTATTTCGAGTCCTTGAAATTGATTTCGGCAACATTTGCTTCTGCTGTTTTTAATCTCATTCCTGCCGTCACTTTTATCTTGGCCGTCACTTCCGGTTTCGAAAAACTAAATTTCCAAAGGGCAGCTGGTAAGGCTAAGGTGTTGGGAACGATAACAGGAGTTGGCGGGGCAATGATGCTGACCTTTCTCAAAGGTGTAGAAATCAACATCTGGACCTCCCACATTAACCTTTTGCATAAAAAGGGTACCACAGAAACGCTAAATGGTGACTCTGGAAGTAAATTGCTAGGAGTTTTTTGTGGTCTTGGAAGCTGCTTATGTTTTGCATTATGGCTCATTATTCAGGCTCAGATGAGTAAAGAGTTCCCAGGCCATCACTCAAGTACAGCTCTGATGTCAACAATGGGGGCAATTCAAGCCACTGTTTTTGCCCTGTGTATTGAGAAGGATTGGAGCCAATGGAGGTTGGGTTGGAACATTAGGCTTCTAGCTTCAGCATATTCGGGAATTGTGGCTTCTGGAATAATGGTTGTTGTGATAGCATGGTGTGTAAGGATGAGGGGTCCATTGTATGCATCTGTTTTCAATCCTCTACTGCTAGTGCTTGTGGCAGTTGCTGGTTCCTTGATGCTGGATGAGAAGCTATACGTAGGAAGTGTGATGGGAGCAGTGCTAATTGTGATGGGATTGTACATGGTGCTGTGGGGTAAGAGCAAGGAAATGAAAAGAGTGAGTGACTTAGAAACTACTCCAGAAATTGAAGAAATTGAGGTTGTTGTGACGTGTAGGGCAACAGAGGATGATAAAAGCAACGACAAGTACAACTGTAGTGAGAGGAACATTATTGAGAAGTGTAATGATAATGCATCAAAAAGCAGAGATGAAGGACAAGACAACGAAAGTAATGGGAAAGAAGATATGGGTAGCTCTGGGAAGCCTTGA 1221 0.4308 MRDIGKVVHGLKPALLMLMVQIAFASVNVLYKLAINDGMSVRIITAYRLIFAAASTVPLALIFERKNIRTLTWRVILKSFFCGLFGGSLFQNLYFESLKLISATFASAVFNLIPAVTFILAVTSGFEKLNFQRAAGKAKVLGTITGVGGAMMLTFLKGVEINIWTSHINLLHKKGTTETLNGDSGSKLLGVFCGLGSCLCFALWLIIQAQMSKEFPGHHSSTALMSTMGAIQATVFALCIEKDWSQWRLGWNIRLLASAYSGIVASGIMVVVIAWCVRMRGPLYASVFNPLLLVLVAVAGSLMLDEKLYVGSVMGAVLIVMGLYMVLWGKSKEMKRVSDLETTPEIEEIEVVVTCRATEDDKSNDKYNCSERNIIEKCNDNASKSRDEGQDNESNGKEDMGSSGKP 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4254g00004 406 MobiDBLite consensus disorder prediction 378 406 - -
Vium4254g00004 406 Pfam EamA-like transporter family 12 152 IPR000620 GO:0016020
Vium4254g00004 406 Pfam EamA-like transporter family 189 327 IPR000620 GO:0016020
Vium4254g00004 406 PANTHER WAT1-RELATED PROTEIN 12 341 IPR030184 GO:0016020|GO:0022857
Vium4254g00004 406 MobiDBLite consensus disorder prediction 378 400 - -
Vium4254g00004 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 332 - -
Vium4254g00004 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4254g00004 Vium-Chr4254 34342 36746 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4254g00004 11 373 Nodulin-like Gene Family AT1G25270 39.669 3.20e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4254g00004 - - pvu:PHAVU_006G210200g 546.199