Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4254g00003 ATGAGAGATATAGGGAAAGTAGTGCATGGGTTGAAACCAGCCCTGCTGATGTTGATGGTGCAGATTGCATTTGCTTCCGTGAACGTGCTCTACAAACTTGCCATAAATGATGGAATGAGCGTGAGAATAATCACTGCCTACCGTCTCATTTTCGCTGCAGCTTCTACAGTTCCTCTTGCTCTTATTTTTGAAAGGAAAAACATACGAACGCTGACTTGGAGGGTGATTTTAAAGTCATTTTTCTGTGGACTATTCGGGGGAAGTCTATTCCAAAACCTTTATTTCGAGTCCTTGAAATTGATTTCGGCAACATTTGCTTCTGCTGTTTTTAATCTCATTCCTGCCGTCACTTTTATCTTGGCCGTCACTTCCGGTTTCGAAAAACTAAATTTCCAAAGGGCAGCTGGTAAGGCTAAGGTGTTGGGAACGATAACAGGAGTTGGCGGGGCAATGATGCTGACCTTTCTCAAAGGTGTAGAAATCAACATCTGGACCTCCCACATTAACCTTTTGCATAAAAAGGGTACCACAGAAACGCTAAATGGTGACTCTGGAAGTAAATTGCTAGGAGTTTTTTGTGGTCTTGGAAGCTGCTTATGTTTTGCATTATGGCTCATTATTCAGGCTCAGATGAGTAAAGAGTTCCCAGGCCATCACTCAAGTACAGCTCTGATGTCAACAATGGGGGCAATTCAAGCCACTGTTTTTGCCCTGTGTATTGAGAAGGATTGGAGCCAATGGAGGTTGGGTTGGAACATTAGGCTTCTAGCTTCAGCATATTCGGGAATTGTGGCTTCTGGAATAATGGTTGTTGTGATAGCATGGTGTGTAAGGATGAGGGGTCCATTGTATGCATCTGTTTTCAATCCTCTACTGCTAGTGCTTGTGGCAGTTGCTGGTTCCTTGATGCTGGATGAGAAGCTATACGTAGGAAGGGCAACAGAGGATGATAAAAGCAACGACAAGTACAACTGTAGTGAGAGGAACATTATTGAGAAGTGTAATGATAATGCATCAAAAAGCAGAGATGAAGGACAAGACAACGAAAGTAATGGGAAAGAAGATATGGGTAGCTCTGGGAAGCCTTGA 1089 0.4316 MRDIGKVVHGLKPALLMLMVQIAFASVNVLYKLAINDGMSVRIITAYRLIFAAASTVPLALIFERKNIRTLTWRVILKSFFCGLFGGSLFQNLYFESLKLISATFASAVFNLIPAVTFILAVTSGFEKLNFQRAAGKAKVLGTITGVGGAMMLTFLKGVEINIWTSHINLLHKKGTTETLNGDSGSKLLGVFCGLGSCLCFALWLIIQAQMSKEFPGHHSSTALMSTMGAIQATVFALCIEKDWSQWRLGWNIRLLASAYSGIVASGIMVVVIAWCVRMRGPLYASVFNPLLLVLVAVAGSLMLDEKLYVGRATEDDKSNDKYNCSERNIIEKCNDNASKSRDEGQDNESNGKEDMGSSGKP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4254g00003 362 Pfam EamA-like transporter family 12 152 IPR000620 GO:0016020
Vium4254g00003 362 Pfam EamA-like transporter family 189 310 IPR000620 GO:0016020
Vium4254g00003 362 MobiDBLite consensus disorder prediction 336 356 - -
Vium4254g00003 362 MobiDBLite consensus disorder prediction 336 362 - -
Vium4254g00003 362 PANTHER WAT1-RELATED PROTEIN 12 310 IPR030184 GO:0016020|GO:0022857
Vium4254g00003 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4254g00003 Vium-Chr4254 34342 36747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4254g00003 11 358 Nodulin-like Gene Family AT1G25270 38.109 2.26e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4254g00003 - - pvu:PHAVU_006G210200g 471.855