Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4254g00002 ATGGAGAAGTTGAACGTGGTGCATGCATTGAAGCCAGTTCTGCTAATGGTGTTGGTGCAGGTTACAAATGCTTGGGTCAATGTTCTCTACAAGCTCGCCCTCAACGATGGCATGAACTTGAGTATCATCGTCGCTTACCGCTATGTTTTTGCGACTGTTTTCATTGCTCCATTAGCTTTTCTTATCGAAAGGAAGACGAGGACGAAGATGACTTGGACGATACTTTTTCAGGCATTCGTATGCGGCTTAATTGGTGGAGCATTGCCTCAAAACTTAAACATGGAAGCAATCGCTTTAACTTCAGTAACGTTCACTACTGCCATATCCAATCTCGTCCCAGCTCTCACCTTCATCATATCCCTTTCCTTCGGATTGGAGAGATTGAATTTAAAAACAGCAGGAGGGAAGGCGAAGATAATTGGAACAATAACTGGAATTAGTGGAGCAATGATTCTAACTTTCTTGAAAGGCCCAGAAGTTCAGATGCTTTCGTTCCACATAAATCTTTTCAACCATCCAAACGGCAATGTCGTACATCCACACGCTACTTCTGGCGTTATGACCATATTCGGTGCACTCGCGTCTGTCGCAAGCAACGTCTCTTATGCACTATGGCTTATCATTCAGGCAAAAATGAGTGAAAGATACCCTTGTCCTTATTCAAGCACAGCGTTAATGTCCCTAATGGGGGCACTGTTATCCGTTTCTTATGCATTTTGTGTTGAAAGGGATTTGAGTGAGTGGAGATTGGGCTGGAATATCAGACTGTTAACTGTAGCTTATGCGGGTATAGTGGTTTCTGGAGTGATGGTGGCTGTGATTTCGTGGTGTGTACGCGCGAGAGGTCCATTGTTTGTCTCTATTTTTAGCCCTCTTATGCTTGTGGTTGTGGCCTTTGCTGGATCCACTATTTTGGACGAGAAGCTATATCTTGGGAGCATAATTGGATCAGTGATGATTATTTGCGGATTATACGTGGTTCTGTGGGGTAAAAGCAAAGAGATGAAGAAGAATCAATCGGTTCCATCAGAAAGCGCCCATAAATTAGACACGGTAGAAATAATGGTCAAACCTCGAGTAGAAGAAAAGAGCAACAATAGCAATAGCCTGGTGAATGCAGTAAATGCGGTTGGGGAAAATGGAGAGAAGAAGTAA 1155 0.4338 MEKLNVVHALKPVLLMVLVQVTNAWVNVLYKLALNDGMNLSIIVAYRYVFATVFIAPLAFLIERKTRTKMTWTILFQAFVCGLIGGALPQNLNMEAIALTSVTFTTAISNLVPALTFIISLSFGLERLNLKTAGGKAKIIGTITGISGAMILTFLKGPEVQMLSFHINLFNHPNGNVVHPHATSGVMTIFGALASVASNVSYALWLIIQAKMSERYPCPYSSTALMSLMGALLSVSYAFCVERDLSEWRLGWNIRLLTVAYAGIVVSGVMVAVISWCVRARGPLFVSIFSPLMLVVVAFAGSTILDEKLYLGSIIGSVMIICGLYVVLWGKSKEMKKNQSVPSESAHKLDTVEIMVKPRVEEKSNNSNSLVNAVNAVGENGEKK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4254g00002 384 Pfam EamA-like transporter family 11 149 IPR000620 GO:0016020
Vium4254g00002 384 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020
Vium4254g00002 384 PANTHER WAT1-RELATED PROTEIN 11 340 IPR030184 GO:0016020|GO:0022857
Vium4254g00002 384 MobiDBLite consensus disorder prediction 361 375 - -
Vium4254g00002 384 MobiDBLite consensus disorder prediction 361 384 - -
Vium4254g00002 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 144 - -
Vium4254g00002 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4254g00002 Vium-Chr4254 25499 29110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4254g00002 1 348 Nodulin-like Gene Family AT1G68170 44.986 2.00e-102 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4254g00002 - - gmx:100788378 656.366