Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4240g00006 ATGCGAAATATCAACACCGTGAAGCAAGAATTCCTCAAAAAGTGGATATGGGGTCTCAGAAAATATAGCTCTCAAAAGAAGAACATGAGTCTGTTGGAGAGAAAGAAAGCCATAAAGCTGTCAGCAGATTTGGCCATGGCTTCCACCAGAAACAAAACCACTCGCTGGAGCAAGGCCCTCATAGCCAATGCTTCCAAAAATAGCAACAACAAAGTCCTCACGGAACACGTGCTAGGCTCATCACCACCGGTAAGGAAAAGCTCTACCAATTATTCCCACAGCAGAAGGATCAGAAGCTGCAGAAAGAGCTTGAGAAGAAACCGCGCGGTCCACATACCAAAGGATAGGGTGGTGGCGAGTTTCATTGCGAGAAAGCTGGTCCAGAAGAGAACGCGGAGGCTGAAGAGTCTCTTACCAGGAGGAGAATTCATGGACGATGTGTCTCTGGTGGAGGAAACCCTAGATTATGTACAATCACTGCGAGCTCAAGTTGAAGTAATGAGATGCCTCGTCACTGCCTCAGAGCTCATGATCCTAAATCCATCGTAA 549 0.4699 MRNINTVKQEFLKKWIWGLRKYSSQKKNMSLLERKKAIKLSADLAMASTRNKTTRWSKALIANASKNSNNKVLTEHVLGSSPPVRKSSTNYSHSRRIRSCRKSLRRNRAVHIPKDRVVASFIARKLVQKRTRRLKSLLPGGEFMDDVSLVEETLDYVQSLRAQVEVMRCLVTASELMILNPS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4240g00006 182 CDD bHLH_AtIBH1_like 127 171 IPR044549 GO:0006355
Vium4240g00006 182 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 6 172 IPR044660 GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4240g00006 1 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30410 39.785 3.26e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4240g00006 - - pvu:PHAVU_003G151300g 307.375