Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4240g00001 ATGACGCTTCTATCTTTTCTCTGTTCCTGTCCTCCAGTAATTCCGCGCTCATGGTTTCCGTTGACGTCTAATACAAGTGCTTTCTCCGTCAATTTCAGGACCCAAATCCATTCCTCTGCTTCCACCAACATTTTCACCCAAAATCTCGACACCACTCTCTTATCCATCGCTGAATCTTTCTACGAGGATGAGCTATGGGCCGCTGCCTGTCTCCGCGTCCGTTCCTTCCATCAATTCCGCCCTGACGCCTTCGGAGTCCGAGATCATATGAGGTACTTGGCTGAGCGCGAGTTCGAAGCACTCAAGGAGCGTGTTTCGGGGAAAAGAACGGGCTTCAGAAGAGTTTCTTGCATTAACGCTTCCCTTCCATTGTCCCACATCGCTTCCCTCTCCCATGATTTATGCTCTTCTTGTAAGTTTTCTGCTAACGGAGAGGAGCGGATTGTAGTTGCCACTCTTGATCTTAATCAGTGCTTGAGCCTTCCTGATGAAATTATGGGGTTGAAGCCTGAGGTCACTGGAGCTGATGTCACCAGGGCATACCTCAGTAATGTATGTGTTGCTGAAGAGTTGCACAGAAATGGGTTGGGTTATGCACTTCTTGAAGTGTCAAAGTTAGTAGCCTATGATTGGGGCATAACAGATTTGTACGTCCATGTTGCTGTCGACAATGAACCAGCAAAGAAATTGTATACGAAAAGTGGGTTTGTCTATGAAAGTGATGAACCCGCGTGGCAGGCCCGGTTTCTGGATCGACCCCGAAGACTTCTACTATGGTCAGGGCTTTGA 789 0.4804 MTLLSFLCSCPPVIPRSWFPLTSNTSAFSVNFRTQIHSSASTNIFTQNLDTTLLSIAESFYEDELWAAACLRVRSFHQFRPDAFGVRDHMRYLAEREFEALKERVSGKRTGFRRVSCINASLPLSHIASLSHDLCSSCKFSANGEERIVVATLDLNQCLSLPDEIMGLKPEVTGADVTRAYLSNVCVAEELHRNGLGYALLEVSKLVAYDWGITDLYVHVAVDNEPAKKLYTKSGFVYESDEPAWQARFLDRPRRLLLWSGL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4240g00001 262 Gene3D - 137 252 - -
Vium4240g00001 262 Pfam Acetyltransferase (GNAT) family 172 236 IPR000182 GO:0016747
Vium4240g00001 262 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 88 255 IPR000182 GO:0016747
Vium4240g00001 262 CDD NAT_SF 179 219 - -
Vium4240g00001 262 FunFam uncharacterized protein LOC106768637 125 252 - -
Vium4240g00001 262 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 173 246 IPR016181 -
Vium4240g00001 262 PANTHER OS08G0260000 PROTEIN 36 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4240g00001 Vium-Chr4240 594 3650 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium4240g00001 Acetyltransf_1 2e-07 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4240g00001 - - vra:106768637 510.76