Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4239g00001 ATGGAGATGGAGAGGTACACCGGTCAGCGGTGGAGACCTACTGACGATCAGGTCAAAATGATGACCCATATCTACAATTACGGGGTCACACATCCCAGCAGAGCCCAAGTCGTCGAGATTGCATCTCGACTAAGGGCTTTCGCAGATGCCACTGAATACAATGTGCACTGCTGGTTTAACAACCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCCACTGGCACTCAGTTTTCACAACTGCCGCTATACATGTATGAATACGACTGGGTGATCATGAGGGCGCCGAGGCTGCTGAACTTGTTCCCCGTTTCGATCATCATTGACGACGATAGGGACGGACGACAAATCGCTCCACCCATGCTTCTCACATTCCGGACCAGAGCTCCCTCGACGGAGCTCTCCCTCAGACCACCGCAACCAGCTCGGGAATTTTTTCGCTGA 450 0.5378 MEMERYTGQRWRPTDDQVKMMTHIYNYGVTHPSRAQVVEIASRLRAFADATEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLYMYEYDWVIMRAPRLLNLFPVSIIIDDDRDGRQIAPPMLLTFRTRAPSTELSLRPPQPAREFFR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4239g00001 149 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 3 68 IPR044555 GO:0003700|GO:0099402
Vium4239g00001 149 ProSiteProfiles 'Homeobox' domain profile. 4 69 IPR001356 GO:0003677
Vium4239g00001 149 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
Vium4239g00001 149 Gene3D - 8 73 - -
Vium4239g00001 149 Pfam Homeodomain 9 68 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4239g00001 Vium-Chr4239 3030 3586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4239g00001 1 72 Wox Gene Family AT5G59340 38.158 3.58e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium4239g00001 Homeodomain 5.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4239g00001 - K03992 vum:124821070 286.189