Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4237g00001 ATGATGTTGGAGATGCCAGAACACCAAGAAGAAATGCAATGCAATTTAGAGTTTGGAAAAATAAAAAGCTTACAGATCCTTCTTGTAGAAAAGAAGGTTGGCTTTCTTAGAAGCCCTGCTACTCTGCCAAACAGTTTGAGAGTGCTGGAATGGCCTGGATGTCCTGCAACTTCTTTACCGCATGATTTTCATTTGAAGAATCTTGTCATACTCGACTTGTCATACAGTTACTTTGGATGGGACAAACCACTAGAGAATTCAAAGGTTTTGAGACACTTGATTGTCGTAGGTTGTAAGAATATTAGACGAATACCTGACATCTCTGGTTTCCACAATTTGACAAAACTTTGTGTTGGTGAATGCACAAATCTGATTGAGATTCATGATTCAGTTGGATCTTTACTTCATCTTAAAGTGTTTTGTGCTGAAGGATGTACCAAGCTCACAATTGGTCTAAGTCGCATAGAGTTGAAATCTTTGGAGCATCTGTGCTTTCCGGGCTGCAGCAGTCTTGTTATGTTTCCAGAAGTATTGGCACCAATGCACAAACTAAACCACGTTGACTTGGGAGGAACTGGCATAAGAAATCTGCCACCATCAATGCAAAATCTTAAGGGTATTAAAGTATTGTCCATGGGGAAAGGCCAAATGCTTGAAATTAATGAATCGTCCAATTTCTTTCAAAACCTGCCAATGTTCTTTCCTAATTTAGAAACATTATATTTACAAAACTTAGACATTACAATCCTTCCTGCCAGCATTGAAGAATGTCACTCTTTGAAATTTCTGCACGTCACCAACTGCAAGAAGCTTCAAGAAATTAGAGGACTTCCATTGAATATTAATCAGTTCTACGCAGCAAACTGTTCTGTTAAAGCCAACTCTTTGATATTAAAACTCAGGCAGGCCATTGATTCTGCTGCAATGAGAATCTGTTTTCTTCCAGGTCGGGAAATCCCAGAATTGTTTGACCACTCTAGCGGGGGAAATTCTACTGATAAGAGCATTGAAGAATGTCACTCTTTGAAATTTCTGCACGTCACCAACTGCAAGAAGCTTCAAGAAATTAGAGGACTTCCATTGAATATTAATCAGTTCTACGCAGCAAACTGTTCTGTTAAAGCCAACTCTTTGATATTAAAACTCAGGCAGGCCATTGATTCTGCTGCAATGAGAATCTGTTTTCTTCCAGGTCGGGAAATCCCAGAATTGTTTGACCACTCTAGCGGGGGAAATTCTACTGATAAGAGGTACAACAATCGAAATAGAATTTCTACGCAGCTACCATGTGATGGATGA 1299 0.3926 MMLEMPEHQEEMQCNLEFGKIKSLQILLVEKKVGFLRSPATLPNSLRVLEWPGCPATSLPHDFHLKNLVILDLSYSYFGWDKPLENSKVLRHLIVVGCKNIRRIPDISGFHNLTKLCVGECTNLIEIHDSVGSLLHLKVFCAEGCTKLTIGLSRIELKSLEHLCFPGCSSLVMFPEVLAPMHKLNHVDLGGTGIRNLPPSMQNLKGIKVLSMGKGQMLEINESSNFFQNLPMFFPNLETLYLQNLDITILPASIEECHSLKFLHVTNCKKLQEIRGLPLNINQFYAANCSVKANSLILKLRQAIDSAAMRICFLPGREIPELFDHSSGGNSTDKSIEECHSLKFLHVTNCKKLQEIRGLPLNINQFYAANCSVKANSLILKLRQAIDSAAMRICFLPGREIPELFDHSSGGNSTDKRYNNRNRISTQLPCDG 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4237g00001 432 MobiDBLite consensus disorder prediction 406 432 - -
Vium4237g00001 432 SUPERFAMILY L domain-like 16 371 - -
Vium4237g00001 432 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 219 IPR044974 GO:0006952
Vium4237g00001 432 Gene3D Ribonuclease Inhibitor 153 387 IPR032675 -
Vium4237g00001 432 Gene3D Ribonuclease Inhibitor 12 152 IPR032675 -
Vium4237g00001 432 MobiDBLite consensus disorder prediction 407 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4237g00001 Vium-Chr4237 14478 16442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4237g00001 11 286 WRKY Transcription Factor Family AT4G12020 29.592 1.66e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4237g00001 - - vum:124837227 881.322