Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4234g00002 ATGGTGGGCTCAGGAGCATCAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAAAAGGGTGTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCGAGAGTTCGAGGTGGTAATGGCTGCAAGGTTGGAGATGACAACGGTAGCTTGATGTTGATGTGGGAAGATGGTTTCTGCCGAGGAAGTGTTGATGGAGAGGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTATTTAAAGAGCCTACAGAATGTGAACCGAATATCTCCAACTATTGGCAGAGTTCATTTGATGCTCTTCCTCCTGAGTGGACAGACCAGTTTGAGTCAGGCATTCAGACCATTGCTGTAATTCAAGCTGGGCATGGCCTTCTCCAACTTGGTTCTTGCAAGATTATTCCAGAAGACCTTCATTTTGTGCTTAGAATGAGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCCCAACTCTTTTCTTCAACAAGAAACACTTCCTCTTCTACGTCTGTTCCTTCAAAACCATCTACCATTCCAGTTAGGCCACCTCCACTATTCAACTGGGGTCAGAGGCCACTCACTTCTGCCACCTCCATGCTATCTTCACCCAATTTTCAACAACATGCAGCTAGACTTGGGTTCCCTAAAGATGAGGCAAACATGTTTCTGATTCCTCATGCATCATCTGAGAGTGCAAGAGTGGAGGACATGATGGGGGAGCATGAAAACGACATAAAATGGCCCAATGGCTTGTCTTTCTTCAATGCTCTCACCGGAAGAACAGATGATGCTAAGCTGTTGTTCAACCCTGATACCTTGGGGAACAAACCAGGTGATCAAACTCAGCATCATCACCCTCTTACTCAAAATCCCAATTCAGATGCCTCCAACATGCAGAATGCCAGTGCAAGCAACCCAAATGAGTTCTTGAGCTTGGATAACAACCAAGACGATGCAAGAAAAATGGACAAGTTCAAGAGAAGCTTCACTCTACCTGCAAGAGTAGCCTCATCATCTTCATCCACTTCAATGGATCACCATCAAACACAAGGTGTGCAGTTTAGGAATTCAGAAGGAGCTATGTACCCGGATGTCATGGAAACCTTTTTGGAGTGA 1224 0.4583 MVGSGASDRSKEAVGMMALHEALKRVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGSVDGEDPVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSVPSKPSTIPVRPPPLFNWGQRPLTSATSMLSSPNFQQHAARLGFPKDEANMFLIPHASSESARVEDMMGEHENDIKWPNGLSFFNALTGRTDDAKLLFNPDTLGNKPGDQTQHHHPLTQNPNSDASNMQNASASNPNEFLSLDNNQDDARKMDKFKRSFTLPARVASSSSSTSMDHHQTQGVQFRNSEGAMYPDVMETFLE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4234g00002 407 MobiDBLite consensus disorder prediction 304 350 - -
Vium4234g00002 407 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 81 180 IPR025610 -
Vium4234g00002 407 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 19 75 IPR025610 -
Vium4234g00002 407 MobiDBLite consensus disorder prediction 310 349 - -
Vium4234g00002 407 PANTHER GB|AAF34833.1 1 407 IPR044170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4234g00002 Vium-Chr4234 5258 10949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4234g00002 20 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 33.728 1.50e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4234g00002 - - gmx:100814723 740.339