Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4234g00001 ATGAGGCCCTCAAAAGGGAGAGTTCGAGGTGGTAATGGCTGCAAGGTTGGAGATGACAACGGTAGCTTGATGTTGATGTGGGAAGATGGTTTCTGCCGAGGAAGTGTTGATGGAGAGGATCCTGTCAGAAAGGCCTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAAGTTGCATCTGATAAGTGCCACAAGTGGGTATTTAAAGAGCCTACAGAATGTGAACCGAATATCTCCAACTATTGGCAGAGTTCATTTGATGCTCTTCCTCCTGAGTGGACAGACCAGTTTGAGTCAGGCATTCAGACCATTGCTGTAATTCAAGCTGGGCATGGCCTTCTCCAACTTGGTTCTTGCAAGATTATTCCAGAAGACCTTCATTTTGTGCTTAGAATGAGACACACTTTTGAATCCCTTGGCTACCAATCTGGTTTCTACCTCTCCCAACTCTTTTCTTCAACAAGAAACACTTCCTCTTCTACGTCTGTTCCTTCAAAACCATCTACCATTCCAGTTAGGCCACCTCCACTATTCAACTGGGGTCAGAGGCCACTCACTTCTGCCACCTCCATGCTATCTTCACCCAATTTTCAACAACATGCAGCTAGACTTGGGTTCCCTAAAGATGAGGCAAACATGTTTCTGATTCCTCATGCATCATCTGAGAGTGCAAGAGTGGAGGACATGATGGGGGAGCATGAAAACGACATAAAATGGCCCAATGGCTTGTCTTTCTTCAATGCTCTCACCGGAAGAACAGATGATGCTAAGCTGTTGTTCAACCCTGATACCTTGGGGAACAAACCAGGTGATCAAACTCAGCATCATCACCCTCTTACTCAAAATCCCAATTCAGATGCCTCCAACATGCAGAATGCCAGTGCAAGCAACCCAAATGAGTTCTTGAGCTTGGATAACAACCAAGACGATGCAAGAAAAATGGACAAGTTCAAGAGAAGCTTCACTCTACCTGCAAGAGTAGCCTCATCATCTTCATCCACTTCAATGGATCACCATCAAACACAAGGTGTGCAGTTTAGGAATTCAGAAGGAGCTATGTACCCGGATGTCATGGAAACCTTTTTGGAGTGA 1110 0.4505 MRPSKGRVRGGNGCKVGDDNGSLMLMWEDGFCRGSVDGEDPVRKAFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSVPSKPSTIPVRPPPLFNWGQRPLTSATSMLSSPNFQQHAARLGFPKDEANMFLIPHASSESARVEDMMGEHENDIKWPNGLSFFNALTGRTDDAKLLFNPDTLGNKPGDQTQHHHPLTQNPNSDASNMQNASASNPNEFLSLDNNQDDARKMDKFKRSFTLPARVASSSSSTSMDHHQTQGVQFRNSEGAMYPDVMETFLE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4234g00001 369 PANTHER GB|AAF34833.1 5 369 IPR044170 -
Vium4234g00001 369 MobiDBLite consensus disorder prediction 272 311 - -
Vium4234g00001 369 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 43 142 IPR025610 -
Vium4234g00001 369 MobiDBLite consensus disorder prediction 266 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4234g00001 Vium-Chr4234 5258 10950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4234g00001 40 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 39.252 7.42e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4234g00001 - - gmx:100814723 652.514