Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4232g00004 ATGCCATTTGGTTTGGTCTCGGCCTGGAACAAGCGCCGGAGAAGCAAATCTCAAGAGCACACAGATCCCTGTAATGGCTCTTTATTTAACATTTACAAACTTTCATATTCAGGGATTTACAAACCTGCACAGCTTTGGCAACTTGAAGATCAGACACCACGACCTACAAAAAGGCTACATGGATCATCTGTTTTCACACTTAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGAGAATCTGCTTGGAAAAGGAGGATTCGGCAAAGTCTACCGAGGCACATTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGTTGCCAGCAATTAAAGCAGCAGAGGGGGAGCGTGAGTTCCGAGTCGAAGTTGATATCTTAAGCAGACTTGACCACCCAAATCTTGTTTCTTTGATAGGCTACTGTGCTGATGGAAAGCATAGATTCCTAGTATATGAATATATGCGTAATGGAAACCTGCAAGATCATTTGAATGGAATTGGGGAAAGAAACATGGATTGGCCTCGAAGACTCCAAGTTGCACTGGGAGCTGCAAAAGGGCTTGCTTATCTTCATTCAAGTTCTGATGTTGGAATTCCTATTGTTCATAGGGATTTCAAATCGACCAATATTCTCTTAGATGACAACTTTGAAGCAAAGATATCTGATTTTGGTCTCGCCAAGTTAATGCCAGAAGGACAAGAGACACATGTGACTGCCAGAGTACTTGGTACCTTTGGCTATTTTGATCCTGAGTATACATCGACTGGAAAACTCACTCTACAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTTTGGAGCTTTTGACTGGACGCCGAGCAGTGGATCTAAATCAAGGTCCCAACGATCAAAACCTTGTACTACAGGTGAGGAACATTCTGAATGACCGCAAAAAGCTTCGGAAGGTGATAGATCCAGAGATGGCTCGAAATTCCTACACCATTCAGTCTATAGTCATGTTTGCCAATCTGGCATCAAGATGTGTTCGAACTGAGAGTAATGAGAGACCGTCCATGGCAGAATGTGTAAAAGAACTCCTAACGATTATCTATACAAATTCAAAAGGCTTGGGTATGGTTATGCATACTTTGAGAATGATCTAG 1128 0.4229 MPFGLVSAWNKRRRSKSQEHTDPCNGSLFNIYKLSYSGIYKPAQLWQLEDQTPRPTKRLHGSSVFTLKEMEEATCSFSDENLLGKGGFGKVYRGTLRSGEVVAIKKMELPAIKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMRNGNLQDHLNGIGERNMDWPRRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLDDNFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRNILNDRKKLRKVIDPEMARNSYTIQSIVMFANLASRCVRTESNERPSMAECVKELLTIIYTNSKGLGMVMHTLRMI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4232g00004 375 Pfam Protein kinase domain 78 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4232g00004 375 FunFam serine/threonine-protein kinase PBS1-like 45 155 - -
Vium4232g00004 375 PANTHER OS01G0750732 PROTEIN 27 357 - -
Vium4232g00004 375 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Vium4232g00004 375 Gene3D Phosphorylase Kinase; domain 1 46 155 - -
Vium4232g00004 375 FunFam receptor-like serine/threonine-protein kinase NCRK 156 366 - -
Vium4232g00004 375 Gene3D Transferase(Phosphotransferase) domain 1 156 366 - -
Vium4232g00004 375 ProSiteProfiles Protein kinase domain profile. 77 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4232g00004 375 SUPERFAMILY Protein kinase-like (PK-like) 63 360 IPR011009 -
Vium4232g00004 375 CDD STKc_IRAK 83 354 - -
Vium4232g00004 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4232g00004 Vium-Chr4232 39501 45125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4232g00004 60 358 Receptor kinase-like Gene Family AT3G58690 47.697 9.45e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Vium4232g00004 Pkinase 3.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4232g00004 - - aprc:113868910 701.049