Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4232g00003 ATGCCATTTGGTTTGGTCTCGGCCTGGAACAAGCGCCGGAGAAGCAAATCTCAAGAGCACACAGATCCCTGGATTTACAAACCTGCACAGCTTTGGCAACTTGAAGATCAGACACCACGACCTACAAAAAGGCTACATGGATCATCTGTTTTCACACTTAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGAGAATCTGCTTGGAAAAGGAGGATTCGGCAAAGTCTACCGAGGCACATTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGTTGCCAGCAATTAAAGCAGCAGAGGGGGAGCGTGAGTTCCGAGTCGAAGTTGATATCTTAAGCAGACTTGACCACCCAAATCTTGTTTCTTTGATAGGCTACTGTGCTGATGGAAAGCATAGATTCCTAGTATATGAATATATGCGTAATGGAAACCTGCAAGATCATTTGAATGGAATTGGGGAAAGAAACATGGATTGGCCTCGAAGACTCCAAGTTGCACTGGGAGCTGCAAAAGGGCTTGCTTATCTTCATTCAAGTTCTGATGTTGGAATTCCTATTGTTCATAGGGATTTCAAATCGACCAATATTCTCTTAGATGACAACTTTGAAGCAAAGATATCTGATTTTGGTCTCGCCAAGTTAATGCCAGAAGGACAAGAGACACATGTGACTGCCAGAGTACTTGGTACCTTTGGCTATTTTGATCCTGAGTATACATCGACTGGAAAACTCACTCTACAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTTTGGAGCTTTTGACTGGACGCCGAGCAGTGGATCTAAATCAAGGTCCCAACGATCAAAACCTTGTACTACAGGTGAGGAACATTCTGAATGACCGCAAAAAGCTTCGGAAGGTGATAGATCCAGAGATGGCTCGAAATTCCTACACCATTCAGTCTATAGTCATGTTTGCCAATCTGGCATCAAGATGTGTTCGAACTGAGAGTAATGAGAGACCGTCCATGGCAGAATGTGTAAAAGAACTCCTAACGATTATCTATACAAATTCAAAAGGCTTGGGTATGGTTATGCATACTTTGAGAATGATCTAG 1086 0.4291 MPFGLVSAWNKRRRSKSQEHTDPWIYKPAQLWQLEDQTPRPTKRLHGSSVFTLKEMEEATCSFSDENLLGKGGFGKVYRGTLRSGEVVAIKKMELPAIKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMRNGNLQDHLNGIGERNMDWPRRLQVALGAAKGLAYLHSSSDVGIPIVHRDFKSTNILLDDNFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRNILNDRKKLRKVIDPEMARNSYTIQSIVMFANLASRCVRTESNERPSMAECVKELLTIIYTNSKGLGMVMHTLRMI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4232g00003 361 CDD STKc_IRAK 69 340 - -
Vium4232g00003 361 Gene3D Phosphorylase Kinase; domain 1 32 141 - -
Vium4232g00003 361 Gene3D Transferase(Phosphotransferase) domain 1 142 352 - -
Vium4232g00003 361 FunFam receptor-like serine/threonine-protein kinase NCRK 142 352 - -
Vium4232g00003 361 PANTHER OS01G0750732 PROTEIN 33 343 - -
Vium4232g00003 361 FunFam serine/threonine-protein kinase PBS1-like 31 141 - -
Vium4232g00003 361 PIRSF ILK 32 351 - -
Vium4232g00003 361 ProSiteProfiles Protein kinase domain profile. 63 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4232g00003 361 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Vium4232g00003 361 SUPERFAMILY Protein kinase-like (PK-like) 49 346 IPR011009 -
Vium4232g00003 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vium4232g00003 361 Pfam Protein kinase domain 64 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4232g00003 Vium-Chr4232 39501 45146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4232g00003 46 344 Receptor kinase-like Gene Family AT3G58690 47.697 6.94e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Vium4232g00003 Pkinase 2.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4232g00003 - - gmx:100796654 707.212