Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4230g00048 ATGGATATATGTCTTGGCTTATATGCCGTCCCAAGGTTGCAAGTTTTGGTGGAGATTTCACCACCTGAAATAGCACAACAGCCTTTGAGAAACAGGAGTGGATCTGGTCGTAAGATGTCGCTGGAGTTTATTGCAGGCATTTTCTCAGCACTGGTAGTGGCCTTACTCTACTGGCTCTTCAGGAAAAAGGTCATTCCATTTCTTAAGCAACGTAAGACTTTGAAAGGAAAGGAACATAAAAGCTTTGAACATGACACTATATCATTAAGGTGTTTTGATTTTAAGGAACTAGAGAAAGCAACAGCAAATTTTAGCGAAGATTGCTTGCTGGGTTCTGGTGCATTTGGAAATGTCTACAAAGGAACTTTTGAGTTAGAAGGAACTCTGGCCATTAAGAGAGCTCATTTTGAATCATTCACAAGCGTGGATGAATTCAGAAATGAAGTTAGGCTTCTTTCAGCTGTTAGGCACAGGAATGTTATTGGTCTGGTTGGATATTGTGAAGAACCAGAACAAGATGGAGCCAAAATACTGGTCTATGAATATGTTCCAAATGGTTCACTGCTTGAGTACATCATGGGCATAGCTTATTTGCATGAAGGTGTGAAGCCAAGCATAATCCACCGTGACATCAAACCAAGCAACATCCTACTAGGGGAAGGTTTTGAGGCTAAGGTTTCGGATTTTGGGTTAGTGAAATCAGGTCCAACTGGTGATCAGTCACATGTGAGCAGCCAGATAAAAGGGACACCAGGGTACCTTGACCCAGCCTATTGTTCAAGCTTTCATTTGACCAAATTCAGTGACGTTTATAGCTTTGGTGTCATACTTTTGCAACTTGTTTCAGCTAGACCTGTGGTGGATTCCACTGATAAACAAAGTAATCAACATATCATTGACTGGGCAAGGCCAAGCATAGAGAAGGGCAGTGTTGAAGAAATCATAGATGCAAATCTACTATGTCAAAGTGAGCCCTGCAATATGGAAGTTATGCTGAAGATGGGGAAACTTGCTTTAAGATGTGTGGTTGAAGAACCAAAACATCGCCCAACAATGACTCAGGTGTGTCAAGAACTAGAGCGAGCCCTCAGCTCATCTGATAGCTTCAACAGCAACAAACAGTCTTCAAAGGGATTCTTTACACCAATTGGTTTATCCCAGCAATCACCCAAGTCTGAGACTCGGGGATCAGTTGAATCATATGATTGTTCACAGAGCTTTGTTAGTATTGATGGTGTTGGATTGCAGAAATTCCATGTTGATATGGATAGTTTCTCCTTTAAGAGCACAAACTTAAGGTGCCTAGAAAATAATAGTATTAGTATTGACATGAATAGAATGTAA 1344 0.4092 MDICLGLYAVPRLQVLVEISPPEIAQQPLRNRSGSGRKMSLEFIAGIFSALVVALLYWLFRKKVIPFLKQRKTLKGKEHKSFEHDTISLRCFDFKELEKATANFSEDCLLGSGAFGNVYKGTFELEGTLAIKRAHFESFTSVDEFRNEVRLLSAVRHRNVIGLVGYCEEPEQDGAKILVYEYVPNGSLLEYIMGIAYLHEGVKPSIIHRDIKPSNILLGEGFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGVILLQLVSARPVVDSTDKQSNQHIIDWARPSIEKGSVEEIIDANLLCQSEPCNMEVMLKMGKLALRCVVEEPKHRPTMTQVCQELERALSSSDSFNSNKQSSKGFFTPIGLSQQSPKSETRGSVESYDCSQSFVSIDGVGLQKFHVDMDSFSFKSTNLRCLENNSISIDMNRM 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4230g00048 447 Gene3D Phosphorylase Kinase; domain 1 66 182 - -
Vium4230g00048 447 SMART serkin_6 104 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4230g00048 447 Pfam Protein kinase domain 107 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4230g00048 447 FunFam Putative LRR receptor-like serine/threonine-protein kinase 70 182 - -
Vium4230g00048 447 SUPERFAMILY Protein kinase-like (PK-like) 83 359 IPR011009 -
Vium4230g00048 447 Gene3D Transferase(Phosphotransferase) domain 1 186 381 - -
Vium4230g00048 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vium4230g00048 447 ProSitePatterns Protein kinases ATP-binding region signature. 110 132 IPR017441 GO:0005524
Vium4230g00048 447 MobiDBLite consensus disorder prediction 367 397 - -
Vium4230g00048 447 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 393 - -
Vium4230g00048 447 ProSiteProfiles Protein kinase domain profile. 104 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4230g00048 Vium-Chr4230 303744 306777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4230g00048 90 417 Receptor kinase-like Gene Family AT1G30570 38.286 1.41e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium4230g00048 Pkinase 1.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4230g00048 - - var:108328541 865.144