Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4230g00043 ATGCTATCAAGGTTGATGGATTTTCTGACTGCCTGCTGGCGGCGAAGATCCTCCGACGGCAAGGGTTCCGAGGTTACGGGGCGGAAGGACGGGCTGCTGTGGTACAAGGATGCCGGGCAGCACTTGTTTGGTGAATACTCGATGGCTGTTGTTCAGGCCAACAACTTGCTTGAGGATCAGAGCCAGATTGAGTCTGGTCCTCTTAGCTTGCTTGAGACTGGTCCTTACGGTACCTTTGTTGGTGTGTATGATGGCCACGGTGGACCTGAGACGTCACGCTACGTTTGTGATCATCTCTTCCAGCATCTTAAACGATTTGCGTCCGAGCAGAAGTCCATGTCAGTGGAGGTTATTCGGAAGGCATACCAAGCCACAGAAGAAGGTTTTTTGTCAGTGGTTACTAAACAGTGGCCTATGAACCCCCAAATTGCTGCTGTGGGATCTTGTTGTTTGGTTGGTGTGATTTGTGGTGGTATCCTCTACATTGCTAACCTTGGCGATTCCCGTGCTGTGCTTGGGCGGGTTGTCAGAGCGACTGGGGAAGTTTTGGCCATCCAGCTTTCGTCTGAGCATAATGTGGGCATAGAATCTGTGCGACAGGAGATGCATTCTTTGCATCCTGATGACTCAAAAATTGTGGTTCTAAAACACAACGTATGGCGGGTGAAGGGTCTCATACAGATTTCTAGATCCATTGGCGATGTATACCTAAAAAAGGCTGAATTCAACAAGGAGCCACTGTATGCCAAGTTTCGTGTACGGGATGGCTTTAGGAGGCCAATTTTGAGCTCCGACCCATCAATTTCTGTTCATGAACTTCAATCGCACGATCAATTTCTCATATTTGCTTCTGATGGTCTTTGGGAACACCTTAGCAATCAAGATGCTGTTGATATAGTTCAAAACAGCCCACAGAATGGAATTGCTCGAAGGCTCATCAAAGCTGCTTTGCAGGAAGCAGCTAAAAAGAGAGAGATGAGGTACTCTGATTTGAAGAAAATTGATCGTGGTGTCCGCAGGCATTTCCACGATGACATCACAGTTGTAGTTGTATTTCTTGACTCCAATCTTGTCAGCAGAGCCAACTCAGTAAGAGGTCCTCCTTTATCAGTGAGAGGAGGTGGTGTTCCCCTTCCTTCTAGAACTTTGGCTCCCTGTGCTGCACCGATGGAAACATAG 1179 0.4784 MLSRLMDFLTACWRRRSSDGKGSEVTGRKDGLLWYKDAGQHLFGEYSMAVVQANNLLEDQSQIESGPLSLLETGPYGTFVGVYDGHGGPETSRYVCDHLFQHLKRFASEQKSMSVEVIRKAYQATEEGFLSVVTKQWPMNPQIAAVGSCCLVGVICGGILYIANLGDSRAVLGRVVRATGEVLAIQLSSEHNVGIESVRQEMHSLHPDDSKIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNKEPLYAKFRVRDGFRRPILSSDPSISVHELQSHDQFLIFASDGLWEHLSNQDAVDIVQNSPQNGIARRLIKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDSNLVSRANSVRGPPLSVRGGGVPLPSRTLAPCAAPMET 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4230g00043 392 SMART PP2C_4 37 351 IPR001932 -
Vium4230g00043 392 CDD PP2Cc 43 353 IPR001932 -
Vium4230g00043 392 ProSiteProfiles PPM-type phosphatase domain profile. 42 353 IPR001932 -
Vium4230g00043 392 Pfam Protein phosphatase 2C 78 322 IPR001932 -
Vium4230g00043 392 SUPERFAMILY PP2C-like 54 354 IPR036457 -
Vium4230g00043 392 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Vium4230g00043 392 Gene3D - 33 363 IPR036457 -
Vium4230g00043 392 FunFam Phosphatase 2C family protein 34 363 - -
Vium4230g00043 392 PANTHER PROTEIN PHOSPHATASE 29 351 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4230g00043 Vium-Chr4230 296759 302868 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4230g00043 1 381 PP2C-type Phosphatase Gene Family AT3G51370 78.740 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4230g00043 K01102 - gmx:100777920 761.14